Rh4AG242900

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002435
Physical Location & Seq
Reverse (-)
55109369 .. 55109780
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG242900.1

Sequence Viewer

Length: 291 bp
ATGGCTTCCTGTCTCTCAAAAGCAAATATCCTTCCCCTTGCCGCCTCCATTCATCGACGAGGTTTCGCGGCTGCATCACATGGCTCAGTGGCAGCTGGATATGGAATGGCAGGGTCCAGGAGTGCTATGGTGAGGAAGCTGGAAGAGCGGGTTGGGATGAAGGAAGAGTCTTCGTCTGCTTGGGCACCGGATCCTCGAACCGGGTACTACAGGCCGGCTAATAGGGGGGATGAGATCGACCCAGTGGAGCTCCGGGAAATGCTCTTGAACCAGAAAGTGAGGCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

96

Amino Acids

10.46

Weight (kDa)

9.64

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 3 - 92 3.9e-26 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 148
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 42, 68, 148
AclWI GGATC 2 cut(s) 185, 198
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 116
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 3 cut(s) 95, 139, 250
AluI AGCT 3 cut(s) 95, 139, 250
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 1 cut(s) 17
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 3 cut(s) 71, 92, 283
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 2 cut(s) 202, 254
AsuHPI GGTGA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 187
BamHI GGATCC 1 cut(s) 190
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 58, 104
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 2 cut(s) 202, 254
BcoDI GTCTC 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 5 cut(s) 42, 69, 72, 93, 284
BlsI GCNGC 5 cut(s) 43, 70, 73, 94, 285
Bme1390I CCNGG 3 cut(s) 118, 202, 254
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmiI GGNNCC 3 cut(s) 115, 186, 192
BmrFI CCNGG 3 cut(s) 118, 202, 254
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 162
BpuMI CCSGG 2 cut(s) 202, 254
BsaWI WCCGGW 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 162, 235
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 242
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 2 cut(s) 58, 104
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 4 cut(s) 188, 201, 215, 253
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 17
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 187, 252
Bsp143I GATC 2 cut(s) 190, 234
BspACI CCGC 3 cut(s) 42, 68, 148
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 98
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 115, 186, 192
BspPI GGATC 2 cut(s) 185, 198
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 214
BssMI GATC 2 cut(s) 190, 234
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 138, 159
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 85
BstF5I GGATG 2 cut(s) 162, 235
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 193, 237
BstMAI GTCTC 1 cut(s) 17
BstMBI GATC 2 cut(s) 190, 234
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 116, 200, 252
BstSFI CTRYAG 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 187
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 58, 104
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 162, 235
BtsIMutI CAGTG 2 cut(s) 93, 249
Cac8I GCNNGC 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 80
CviJI RGCY 8 cut(s) 5, 71, 84, 95, 139, 214, 218, 250
CviKI_1 RGCY 8 cut(s) 5, 71, 84, 95, 139, 214, 218, 250
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 85
DpnI GATC 2 cut(s) 192, 236
DpnII GATC 2 cut(s) 190, 234
Eam1104I CTCTTC 2 cut(s) 138, 159
EarI CTCTTC 2 cut(s) 138, 159
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 81, 102, 128
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 141
Fnu4HI GCNGC 5 cut(s) 42, 69, 72, 93, 284
FokI GGATG 2 cut(s) 169, 242
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 5 cut(s) 42, 69, 72, 93, 284
GluI GCNGC 5 cut(s) 42, 69, 72, 93, 284
HaeIII GGCC 1 cut(s) 214
HapII CCGG 4 cut(s) 188, 201, 215, 253
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 167
HpaII CCGG 4 cut(s) 188, 201, 215, 253
HphI GGTGA 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 265
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 41, 154
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 85
Hsp92II CATG 1 cut(s) 83
KroI GCCGGC 1 cut(s) 214
KroNI GCCGGC 1 cut(s) 216
Kzo9I GATC 2 cut(s) 190, 234
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 2 cut(s) 247, 255
Lsp1109I GCAGC 2 cut(s) 58, 104
LweI GCATC 1 cut(s) 83
MalI GATC 2 cut(s) 192, 236
MbiI CCGCTC 1 cut(s) 148
MboI GATC 2 cut(s) 190, 234
MboII GAAGA 3 cut(s) 155, 162, 176
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 187, 252
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 5 cut(s) 53, 55, 126, 204, 273
MroNI GCCGGC 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 4 cut(s) 188, 201, 215, 253
MspR9I CCNGG 3 cut(s) 118, 202, 254
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 145
NaeI GCCGGC 1 cut(s) 216
NciI CCSGG 2 cut(s) 202, 254
NdeII GATC 2 cut(s) 190, 234
NgoMIV GCCGGC 1 cut(s) 214
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 3 cut(s) 115, 186, 192
PciSI GCTCTTC 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 216
PfoI TCCNGGA 2 cut(s) 116, 252
PkrI GCNGC 5 cut(s) 43, 70, 73, 94, 285
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 115, 186, 192
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 1 cut(s) 252
SapI GCTCTTC 1 cut(s) 138
SatI GCNGC 5 cut(s) 42, 69, 72, 93, 284
Sau3AI GATC 2 cut(s) 190, 234
Sau96I GGNCC 1 cut(s) 114
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 3 cut(s) 118, 202, 254
SduI GDGCHC 2 cut(s) 187, 252
SetI ASST 4 cut(s) 64, 97, 141, 252
SfaNI GCATC 1 cut(s) 83
SfcI CTRYAG 1 cut(s) 208
SinI GGWCC 1 cut(s) 114
SsiI CCGC 3 cut(s) 42, 68, 148
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 3 cut(s) 116, 200, 252
TaqI TCGA 3 cut(s) 55, 196, 237
TauI GCSGC 2 cut(s) 44, 71
TscAI CASTG 2 cut(s) 93, 249
TseI GCWGC 3 cut(s) 71, 92, 283
TspDTI ATGAA 2 cut(s) 41, 173
TspRI CASTG 2 cut(s) 93, 249
VpaK11BI GGWCC 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.