Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

1485634 .. 1486511

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026239

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATGATCGCTGCTTAGGCCGGCGAAGCTACTCATGGATTCCGATACGGATCTGGGATCCGGGCACTATGTGGTGGTTTCGATGCTTCTTTGCAGATTTGACATTGATGGTGCTGACCGGGATATTTTGGTTTTCCTCGACATTGGAGGTTGGCGGTGTGATGCTGACTGCGGTAGTGCTCGGTGGTGCAGTCGCTGGCCGGACTTGGCTGCGAAGGATGGCGGTGAGGTGGAGAGGCGACGCAACAAGTCGGGGTGGGCTCCCGGTTTTGGTACATGATGGTGGCACCGGCGGGCAAACGACGCGGTGTAGCGCTGGGCTTTGGGTGCCCATAGTGGTTGAGAGGCCCACGGTCATGGGTGTGGACTCTTGGGTGCAGTCATGGGCCCATTCTTTTTTCTCAAGCTATTGGGTTTGGGACCCGGGTGGAATGGATGAGGGTATGGGCTTCCTAGACTTCTGGAGGCCTTACCTAATGTCCAATATTATAAATAAGGAGACTGTTGTTATCATGCGCTCGATTGATGTCGCAGATAAGTCAAGTTTTCCATTAGTTTTTAGTTTACTTTTATTTCCTTGCAGATCGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTGGGCTACTATACTGTAAGCACCTCAATTGCGAGCATTGGCGAGCAGCATAGCCGGTTTTTAATGGACGAGGATAATCTACATCACTTTGTAGGATGCCCCTATAAACGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

28.03

Weight (kDa)

6.95

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
AccB1I	GGYRCC	2 cut(s)	287, 328
AccII	CGCG	1 cut(s)	307
AciI	CCGC	5 cut(s)	156, 173, 224, 294, 307
AclWI	GGATC	3 cut(s)	53, 59, 66
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	597
AdeI	CACNNNGTG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	276
AfeI	AGCGCT	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	613
AluBI	AGCT	2 cut(s)	30, 408
AluI	AGCT	2 cut(s)	30, 408
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	3 cut(s)	53, 59, 66
AlwNI	CAGNNNCTG	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	424
Aor51HI	AGCGCT	1 cut(s)	316
AoxI	GGCC	5 cut(s)	19, 199, 347, 387, 467
ApaI	GGGCCC	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	12, 211, 670
ApoI	RAATTY	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	317, 519
AspS9I	GGNCC	4 cut(s)	348, 387, 388, 421
AsuC2I	CCSGG	5 cut(s)	63, 121, 266, 425, 426
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	421
BaeGI	GKGCMC	3 cut(s)	68, 333, 391
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	2 cut(s)	287, 328
BanII	GRGCYC	2 cut(s)	264, 391
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	198, 682
BccI	CCATC	4 cut(s)	103, 214, 275, 583
BcnI	CCSGG	5 cut(s)	63, 121, 266, 425, 426
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	318
BisI	GCNGC	3 cut(s)	13, 212, 671
BlsI	GCNGC	3 cut(s)	14, 213, 672
Bme1390I	CCNGG	5 cut(s)	63, 121, 266, 425, 426
Bme18I	GGWCC	1 cut(s)	421
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	4 cut(s)	348, 387, 388, 421
BmiI	GGNNCC	7 cut(s)	60, 263, 289, 330, 389, 422, 423
BmrFI	CCNGG	5 cut(s)	63, 121, 266, 425, 426
BmsI	GCATC	3 cut(s)	74, 153, 710
BpmI	CTGGAG	1 cut(s)	484
Bpu10I	CCTNAGC	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	5 cut(s)	63, 121, 266, 425, 426
Bsa29I	ATCGAT	1 cut(s)	587
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	351, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	3 cut(s)	21, 290, 678
Bse8I	GATNNNNATC	1 cut(s)	50
BseCI	ATCGAT	1 cut(s)	587
BseDI	CCNNGG	2 cut(s)	351, 424
BseGI	GGATG	4 cut(s)	10, 225, 442, 725
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseSI	GKGCMC	3 cut(s)	68, 333, 391
BseXI	GCAGC	2 cut(s)	198, 682
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	2 cut(s)	210, 398
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	5 cut(s)	21, 201, 349, 389, 469
BshNI	GGYRCC	2 cut(s)	287, 328
BshVI	ATCGAT	1 cut(s)	587
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	8 cut(s)	22, 62, 120, 202, 266, 291, 425, 679
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	5 cut(s)	21, 201, 349, 389, 469
BsoBI	CYCGRG	1 cut(s)	424
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	5 cut(s)	68, 183, 264, 333, 391
Bsp143I	GATC	4 cut(s)	7, 51, 58, 584
BspACI	CCGC	5 cut(s)	156, 173, 224, 294, 307
BspANI	GGCC	5 cut(s)	21, 201, 349, 389, 469
BspDI	ATCGAT	1 cut(s)	587
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	7 cut(s)	60, 263, 289, 330, 389, 422, 423
BspPI	GGATC	3 cut(s)	53, 59, 66
BspT107I	GGYRCC	2 cut(s)	287, 328
BsrFI	RCCGGY	3 cut(s)	21, 290, 678
BssAI	RCCGGY	3 cut(s)	21, 290, 678
BssECI	CCNNGG	2 cut(s)	351, 424
BssMI	GATC	4 cut(s)	7, 51, 58, 584
Bst4CI	ACNGT	3 cut(s)	355, 505, 640
BstC8I	GCNNGC	5 cut(s)	23, 199, 296, 658, 668
BstDEI	CTNAG	1 cut(s)	16
BstDSI	CCRYGG	1 cut(s)	351
BstF5I	GGATG	4 cut(s)	10, 225, 442, 725
BstFNI	CGCG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	317, 519
BstKTI	GATC	4 cut(s)	10, 54, 61, 587
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	4 cut(s)	7, 51, 58, 584
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 27, 304, 328
BstSCI	CCNGG	5 cut(s)	61, 119, 264, 423, 424
BstSLI	GKGCMC	3 cut(s)	68, 333, 391
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	198, 682
BstX2I	RGATCY	2 cut(s)	51, 58
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	2 cut(s)	51, 58
Bsu15I	ATCGAT	1 cut(s)	587
BsuRI	GGCC	5 cut(s)	21, 201, 349, 389, 469
BsuTUI	ATCGAT	1 cut(s)	587
BtgI	CCRYGG	1 cut(s)	351
BtsCI	GGATG	4 cut(s)	10, 225, 442, 725
Cac8I	GCNNGC	5 cut(s)	23, 199, 296, 658, 668
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	2 cut(s)	317, 519
Cfr10I	RCCGGY	3 cut(s)	21, 290, 678
Cfr13I	GGNCC	4 cut(s)	348, 387, 388, 421
Cfr9I	CCCGGG	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	587
CseI	GACGC	2 cut(s)	251, 313
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	5 cut(s)	36, 278, 358, 384, 514
CviQI	GTAC	1 cut(s)	275
DdeI	CTNAG	1 cut(s)	16
DpnI	GATC	4 cut(s)	9, 53, 60, 586
DpnII	GATC	4 cut(s)	7, 51, 58, 584
DraIII	CACNNNGTG	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	2 cut(s)	264, 391
Eco47I	GGWCC	1 cut(s)	421
Eco47III	AGCGCT	1 cut(s)	316
Eco88I	CYCGRG	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	421
EcoT38I	GRGCYC	2 cut(s)	264, 391
FaeI	CATG	5 cut(s)	39, 281, 361, 387, 517
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	35, 277, 357, 383, 513
FauI	CCCGC	1 cut(s)	287
Fnu4HI	GCNGC	3 cut(s)	13, 212, 671
FokI	GGATG	4 cut(s)	17, 232, 449, 732
FriOI	GRGCYC	2 cut(s)	264, 391
Fsp4HI	GCNGC	3 cut(s)	13, 212, 671
FspBI	CTAG	1 cut(s)	455
GlaI	GCGC	2 cut(s)	316, 518
GluI	GCNGC	3 cut(s)	13, 212, 671
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	484
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	21, 201, 349, 389, 469
HapII	CCGG	8 cut(s)	22, 62, 120, 202, 266, 291, 425, 679
HgaI	GACGC	2 cut(s)	251, 313
HhaI	GCGC	2 cut(s)	317, 519
Hin1II	CATG	5 cut(s)	39, 281, 361, 387, 517
Hin6I	GCGC	2 cut(s)	315, 517
HinP1I	GCGC	2 cut(s)	315, 517
HinfI	GANTC	3 cut(s)	40, 368, 617
HpaII	CCGG	8 cut(s)	22, 62, 120, 202, 266, 291, 425, 679
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	367, 566
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	2 cut(s)	367, 566
Hpy99I	CGWCG	2 cut(s)	245, 307
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	3 cut(s)	355, 505, 640
HpyCH4V	TGCA	4 cut(s)	95, 191, 379, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 27, 304, 328
HpyF3I	CTNAG	1 cut(s)	16
Hsp92II	CATG	5 cut(s)	39, 281, 361, 387, 517
HspAI	GCGC	2 cut(s)	315, 517
KflI	GGGWCCC	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	21
KroNI	GCCGGC	1 cut(s)	23
Kzo9I	GATC	4 cut(s)	7, 51, 58, 584
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	2 cut(s)	198, 682
LweI	GCATC	3 cut(s)	74, 153, 710
MaeI	CTAG	1 cut(s)	455
MalI	GATC	4 cut(s)	9, 53, 60, 586
MboI	GATC	4 cut(s)	7, 51, 58, 584
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	2 cut(s)	51, 58
MhlI	GDGCHC	5 cut(s)	68, 183, 264, 333, 391
MluCI	AATT	2 cut(s)	597, 651
MlyI	GAGTC	2 cut(s)	362, 626
MnlI	CCTC	9 cut(s)	142, 148, 222, 230, 339, 433, 459, 658, 688
MroNI	GCCGGC	1 cut(s)	21
MseI	TTAA	1 cut(s)	686
MslI	CAYNNNNRTG	3 cut(s)	282, 356, 362
MspI	CCGG	8 cut(s)	22, 62, 120, 202, 266, 291, 425, 679
MspR9I	CCNGG	5 cut(s)	63, 121, 266, 425, 426
MunI	CAATTG	1 cut(s)	651
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	4 cut(s)	18, 27, 304, 328
NaeI	GCCGGC	1 cut(s)	23
NciI	CCSGG	5 cut(s)	63, 121, 266, 425, 426
NdeII	GATC	4 cut(s)	7, 51, 58, 584
NgoMIV	GCCGGC	1 cut(s)	21
NlaIII	CATG	5 cut(s)	39, 281, 361, 387, 517
NlaIV	GGNNCC	7 cut(s)	60, 263, 289, 330, 389, 422, 423
PceI	AGGCCT	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	14, 213, 672
PleI	GAGTC	2 cut(s)	362, 625
PpsI	GAGTC	2 cut(s)	362, 625
PpuMI	RGGWCCY	1 cut(s)	421
PsiI	TTATAA	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	7 cut(s)	60, 263, 289, 330, 389, 422, 423
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	4 cut(s)	348, 387, 388, 421
PspPPI	RGGWCCY	1 cut(s)	421
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	51, 58
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	3 cut(s)	282, 356, 362
SaqAI	TTAA	1 cut(s)	686
SatI	GCNGC	3 cut(s)	13, 212, 671
Sau3AI	GATC	4 cut(s)	7, 51, 58, 584
Sau96I	GGNCC	4 cut(s)	348, 387, 388, 421
SchI	GAGTC	2 cut(s)	362, 626
ScrFI	CCNGG	5 cut(s)	63, 121, 266, 425, 426
SduI	GDGCHC	5 cut(s)	68, 183, 264, 333, 391
SetI	ASST	6 cut(s)	32, 153, 233, 410, 477, 650
SfaNI	GCATC	3 cut(s)	74, 153, 710
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	421
SmaI	CCCGGG	1 cut(s)	426
SmiMI	CAYNNNNRTG	3 cut(s)	282, 356, 362
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	2 cut(s)	597, 651
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	5 cut(s)	156, 173, 224, 294, 307
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	1 cut(s)	455
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	5 cut(s)	61, 119, 264, 423, 424
TaaI	ACNGT	3 cut(s)	355, 505, 640
TaqI	TCGA	4 cut(s)	82, 140, 521, 587
TasI	AATT	2 cut(s)	597, 651
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	686
Tru9I	TTAA	1 cut(s)	686
TseI	GCWGC	3 cut(s)	12, 211, 670
TspGWI	ACGGA	1 cut(s)	64
TspMI	CCCGGG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	597
XmaI	CCCGGG	1 cut(s)	424
XspI	CTAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.