Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

599898 .. 600312

Gene Structure 415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000160.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggcttcctgtctctcaaaagcaaatatccttccccttgccgcctctattcatcgacgaggtttcgcggctgcatcacatggctcagtggcagctggatatggaatggcagggtccaggagtgctatggtgaggaagctggaagatcagcgggttgggatgaaggaagagtcttcgtctgcttgggcaccggatcctcgaaccgggtactacaggccggctaataggggggatgagatcgacccagtggagctccgggaaatgctcttgaaccagaaagtgaggcagcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

97

Amino Acids

10.57

Weight (kDa)

9.64

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	68
AciI	CCGC	3 cut(s)	42, 68, 151
AclWI	GGATC	2 cut(s)	188, 201
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	3 cut(s)	95, 139, 253
AluI	AGCT	3 cut(s)	95, 139, 253
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	188, 201
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	71, 92, 286
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	205, 257
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	190
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	58, 104
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	2 cut(s)	205, 257
BcoDI	GTCTC	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	5 cut(s)	42, 69, 72, 93, 287
BlsI	GCNGC	5 cut(s)	43, 70, 73, 94, 288
Bme1390I	CCNGG	3 cut(s)	118, 205, 257
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	3 cut(s)	115, 189, 195
BmrFI	CCNGG	3 cut(s)	118, 205, 257
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	205, 257
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	165, 238
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	2 cut(s)	58, 104
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	217
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	255
BsiSI	CCGG	4 cut(s)	191, 204, 218, 256
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	190, 255
Bsp143I	GATC	3 cut(s)	145, 193, 237
BspACI	CCGC	3 cut(s)	42, 68, 151
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	115, 189, 195
BspPI	GGATC	2 cut(s)	188, 201
BspT107I	GGYRCC	1 cut(s)	187
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	217
BssMI	GATC	3 cut(s)	145, 193, 237
Bst2UI	CCWGG	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	165, 238
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	148, 196, 240
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	3 cut(s)	145, 193, 237
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	3 cut(s)	116, 203, 255
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	58, 104
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	165, 238
BtsIMutI	CAGTG	2 cut(s)	93, 252
Cac8I	GCNNGC	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	8 cut(s)	5, 71, 84, 95, 139, 217, 221, 253
CviKI_1	RGCY	8 cut(s)	5, 71, 84, 95, 139, 217, 221, 253
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	3 cut(s)	147, 195, 239
DpnII	GATC	3 cut(s)	145, 193, 237
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	253
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	1 cut(s)	83
FaiI	YATR	3 cut(s)	81, 102, 128
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	144
Fnu4HI	GCNGC	5 cut(s)	42, 69, 72, 93, 287
FokI	GGATG	2 cut(s)	172, 245
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	5 cut(s)	42, 69, 72, 93, 287
GluI	GCNGC	5 cut(s)	42, 69, 72, 93, 287
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	4 cut(s)	191, 204, 218, 256
Hin1II	CATG	1 cut(s)	83
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	4 cut(s)	191, 204, 218, 256
HphI	GGTGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	41, 157
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	83
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	145, 193, 237
LmnI	GCTCC	2 cut(s)	250, 258
Lsp1109I	GCAGC	2 cut(s)	58, 104
LweI	GCATC	1 cut(s)	83
MalI	GATC	3 cut(s)	147, 195, 239
MboI	GATC	3 cut(s)	145, 193, 237
MboII	GAAGA	3 cut(s)	155, 165, 179
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	190, 255
MlyI	GAGTC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	53, 55, 126, 207, 276
MroNI	GCCGGC	1 cut(s)	217
MspA1I	CMGCKG	2 cut(s)	95, 151
MspI	CCGG	4 cut(s)	191, 204, 218, 256
MspR9I	CCNGG	3 cut(s)	118, 205, 257
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	68
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	2 cut(s)	205, 257
NdeII	GATC	3 cut(s)	145, 193, 237
NgoMIV	GCCGGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	3 cut(s)	115, 189, 195
PdiI	GCCGGC	1 cut(s)	219
PfoI	TCCNGGA	2 cut(s)	116, 255
PkrI	GCNGC	5 cut(s)	43, 70, 73, 94, 288
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	115, 189, 195
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	95
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	5 cut(s)	42, 69, 72, 93, 287
Sau3AI	GATC	3 cut(s)	145, 193, 237
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	3 cut(s)	118, 205, 257
SduI	GDGCHC	2 cut(s)	190, 255
SetI	ASST	4 cut(s)	64, 97, 141, 255
SfaNI	GCATC	1 cut(s)	83
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	114
SsiI	CCGC	3 cut(s)	42, 68, 151
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	116, 203, 255
TaqI	TCGA	3 cut(s)	55, 199, 240
TauI	GCSGC	2 cut(s)	44, 71
TscAI	CASTG	2 cut(s)	93, 252
TseI	GCWGC	3 cut(s)	71, 92, 286
TspDTI	ATGAA	2 cut(s)	41, 176
TspRI	CASTG	2 cut(s)	93, 252
VpaK11BI	GGWCC	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.