Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

14698926 .. 14699571

Gene Structure 646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1173500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTAAGGTTCCTAAAATATCTTCTCTTCTTCTCAGGCGATCGTATAAGGCTGCAGCTGAGAGTGTAAGAGGGCTGAAGGGGGCAGCGACGACGTTGAGGACAACAACAACAACAGAATCAGGCGGTAGAACTGTCAATAATAGTGCAGCAAGGTATGATGGTGAACATAAGCAAGCTTTTTGGATGAAAGACTCGAAGACGGGGAACTGGATTCCGGAGACTCACTTTGGAGAGGTTGATGCTGCAGAACAGAGGGAGCAGCTCCTCCATAATCCCAATAAAAAAAACAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

100

Amino Acids

11.0

Weight (kDa)

9.99

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_3a	PF03242	6 - 92	3e-16	Late embryogenesis abundant protein (LEA_3a subfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	98
AluBI	AGCT	3 cut(s)	59, 179, 265
AluI	AGCT	3 cut(s)	59, 179, 265
Alw26I	GTCTC	1 cut(s)	215
Aor13HI	TCCGGA	1 cut(s)	217
ApeKI	GCWGC	6 cut(s)	53, 56, 86, 149, 245, 262
AsuHPI	GGTGA	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	6 cut(s)	40, 68, 98, 161, 232, 274
BccI	CCATC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	2 cut(s)	54, 246
BisI	GCNGC	6 cut(s)	54, 57, 87, 150, 246, 263
BlsI	GCNGC	6 cut(s)	55, 58, 88, 151, 247, 264
BmiI	GGNNCC	1 cut(s)	12
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	215
BseAI	TCCGGA	1 cut(s)	217
BseGI	GGATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	49, 51
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	6 cut(s)	40, 68, 98, 161, 232, 274
BsgI	GTGCAG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	215
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	48, 52
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	2 cut(s)	58, 250
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	6, 35, 60
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	41
BstMCI	CGRYCG	1 cut(s)	44
BstSFI	CTRYAG	2 cut(s)	54, 246
BstV1I	GCAGC	6 cut(s)	40, 68, 98, 161, 232, 274
BstV2I	GAAGAC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	177
CviJI	RGCY	6 cut(s)	5, 53, 59, 76, 179, 265
CviKI_1	RGCY	6 cut(s)	5, 53, 59, 76, 179, 265
DdeI	CTNAG	3 cut(s)	6, 35, 60
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	98
FaiI	YATR	4 cut(s)	48, 159, 171, 273
Fnu4HI	GCNGC	6 cut(s)	54, 57, 87, 150, 246, 263
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	6 cut(s)	54, 57, 87, 150, 246, 263
GluI	GCNGC	6 cut(s)	54, 57, 87, 150, 246, 263
HapII	CCGG	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	4 cut(s)	119, 194, 214, 223
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	167
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	3 cut(s)	56, 149, 248
HpyF3I	CTNAG	3 cut(s)	6, 35, 60
HpySE526I	ACGT	1 cut(s)	95
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	259, 270
LpnPI	CCDG	4 cut(s)	22, 108, 196, 231
Lsp1109I	GCAGC	6 cut(s)	40, 68, 98, 161, 232, 274
LweI	GCATC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	95
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	4 cut(s)	15, 20, 23, 211
MlyI	GAGTC	2 cut(s)	188, 217
MnlI	CCTC	5 cut(s)	65, 93, 229, 249, 278
MroI	TCCGGA	1 cut(s)	217
MseI	TTAA	1 cut(s)	298
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	119, 214
PkrI	GCNGC	6 cut(s)	55, 58, 88, 151, 247, 264
Ple19I	CGATCG	1 cut(s)	44
PleI	GAGTC	2 cut(s)	188, 217
PpsI	GAGTC	2 cut(s)	188, 217
PspN4I	GGNNCC	1 cut(s)	12
PstI	CTGCAG	2 cut(s)	58, 250
PvuI	CGATCG	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	6 cut(s)	54, 57, 87, 150, 246, 263
Sau3AI	GATC	1 cut(s)	41
SchI	GAGTC	2 cut(s)	188, 217
SetI	ASST	7 cut(s)	12, 61, 98, 158, 181, 240, 267
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	2 cut(s)	54, 246
SgeI	CNNG	8 cut(s)	49, 135, 165, 188, 208, 216, 223, 230
SsiI	CCGC	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	197
TfiI	GAWTC	2 cut(s)	119, 214
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TseI	GCWGC	6 cut(s)	53, 56, 86, 149, 245, 262
TspDTI	ATGAA	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.