RLG00000020275

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002435
Physical Location & Seq
Forward (+)
63137347 .. 63141270
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020275

Sequence Viewer

Length: 603 bp
ATGGATTCCGATACGGCTTTGGGATTCGGGCACTATGTGGTGGTTTCGATGCTTCTTTGTAGATCTGACATTGATGGTGCTGACCGGGATATTCTGGTTTTCCTTAACCTTGGAGGTTGGCGGCGTGATGCTGGTTGTGGTAGTGCGCTGTGGTGCAGTCGCTGCCCGGACTTGGCTGCGAAGGATGGTGGTGAGGTGGAGAGGCGACACAACAAATCGACGGTGGCATCGGCGGGCCAACGAAGAGAAGTAGTGTTGGGCTTTGGATTGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTGGGCTACTATACTGTTCCCATGAACCCGTTTCTCCTTCTCAGCAAGAGATGGTATAAGGTAGCTGCAGAGAGTACTAGTACTGAAAGAGTGCAGCCAGCAGTGTCAACAATGAGGAGGATGGCAACAACAGAATCCTCCGGCAGCAGCGGTGGAGCCGTCGCAGATGATCAGGAGAAGAAGAAAGTGTTTTGGATGAGAGACCCAAAGACGGGGAACTGGATTCCAGAGAATCACTTTGAAGAGATTGATGCTGCAGAGCTCAGGGAGAAGCTCCTCAACAAGCACAAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

201

Amino Acids

22.37

Weight (kDa)

6.91

Isoelectric Point (pI)

51.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 116 - 198 2.9e-17 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 121, 233, 456
AcsI RAATTY 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 2 cut(s) 382, 388
AfiI CCNNNNNNNGG 3 cut(s) 172, 517, 518
AgsI TTSAA 2 cut(s) 295, 548
AhlI ACTAGT 1 cut(s) 383
AluBI AGCT 3 cut(s) 371, 568, 580
AluI AGCT 3 cut(s) 371, 568, 580
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 501
AlwNI CAGNNNCTG 1 cut(s) 162
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 7 cut(s) 162, 176, 371, 400, 450, 453, 560
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 2 cut(s) 86, 167
AsuHPI GGTGA 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 7 cut(s) 149, 163, 358, 412, 462, 465, 547
BccI CCATC 5 cut(s) 68, 179, 265, 351, 421
BceAI ACGGC 2 cut(s) 30, 449
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 2 cut(s) 86, 167
BcoDI GTCTC 1 cut(s) 501
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 2 cut(s) 372, 561
BglII AGATCT 1 cut(s) 62
BisI GCNGC 8 cut(s) 122, 163, 177, 372, 401, 451, 454, 561
BlsI GCNGC 8 cut(s) 123, 164, 178, 373, 402, 452, 455, 562
BmcAI AGTACT 2 cut(s) 382, 388
Bme1390I CCNGG 2 cut(s) 86, 167
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 2 cut(s) 86, 167
BmsI GCATC 4 cut(s) 39, 118, 236, 547
Bpu10I CCTNAGC 1 cut(s) 569
BpuMI CCSGG 2 cut(s) 86, 167
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 517, 518
Bse1I ACTGG 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 3 cut(s) 190, 432, 507
BseLI CCNNNNNNNGG 3 cut(s) 172, 517, 518
BseMII CTCAG 2 cut(s) 361, 583
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 2 cut(s) 436, 572
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 7 cut(s) 149, 163, 358, 412, 462, 465, 547
BsgI GTGCAG 2 cut(s) 175, 419
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 3 cut(s) 85, 167, 447
BslI CCNNNNNNNGG 3 cut(s) 172, 517, 518
BsmAI GTCTC 1 cut(s) 501
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 33, 570
Bsp143I GATC 2 cut(s) 62, 475
BspACI CCGC 3 cut(s) 121, 233, 456
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 2 cut(s) 360, 582
BspLI GGNNCC 1 cut(s) 463
BspMAI CTGCAG 2 cut(s) 376, 565
BspTNI GGTCTC 1 cut(s) 501
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 62, 475
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 223, 322
Bst6I CTCTTC 2 cut(s) 238, 543
BstAPI GCANNNNNTGC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 235, 405
BstDEI CTNAG 2 cut(s) 347, 569
BstF5I GGATG 3 cut(s) 190, 432, 507
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 2 cut(s) 65, 478
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 2 cut(s) 62, 475
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 84, 165
BstSFI CTRYAG 2 cut(s) 372, 561
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 7 cut(s) 149, 163, 358, 412, 462, 465, 547
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 3 cut(s) 190, 432, 507
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 235, 405
CaiI CAGNNNCTG 1 cut(s) 162
CfoI GCGC 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 235
Csp6I GTAC 2 cut(s) 381, 387
CviAII CATG 1 cut(s) 328
CviQI GTAC 2 cut(s) 381, 387
DdeI CTNAG 2 cut(s) 347, 569
DpnI GATC 2 cut(s) 64, 477
DpnII GATC 2 cut(s) 62, 475
DraIII CACNNNGTG 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 238, 543
EarI CTCTTC 2 cut(s) 238, 543
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 570
Eco31I GGTCTC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 568
EcoICRI GAGCTC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 1 cut(s) 331
FaiI YATR 4 cut(s) 36, 318, 329, 363
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 226
FbaI TGATCA 1 cut(s) 475
Fnu4HI GCNGC 8 cut(s) 122, 163, 177, 372, 401, 451, 454, 561
FokI GGATG 3 cut(s) 197, 439, 514
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 8 cut(s) 122, 163, 177, 372, 401, 451, 454, 561
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 147
GluI GCNGC 8 cut(s) 122, 163, 177, 372, 401, 451, 454, 561
HaeIII GGCC 1 cut(s) 237
HapII CCGG 3 cut(s) 85, 167, 447
HhaI GCGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 6 cut(s) 5, 24, 299, 440, 529, 538
HpaII CCGG 3 cut(s) 85, 167, 447
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 10, 67
Hpy188III TCNNGA 2 cut(s) 479, 533
Hpy8I GTNNAC 1 cut(s) 414
Hpy99I CGWCG 2 cut(s) 223, 470
HpyAV CCTTC 2 cut(s) 175, 353
HpyCH4III ACNGT 2 cut(s) 223, 322
HpyCH4V TGCA 4 cut(s) 156, 374, 400, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 347, 569
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 2 cut(s) 62, 475
LmnI GCTCC 2 cut(s) 461, 585
Lsp1109I GCAGC 7 cut(s) 149, 163, 358, 412, 462, 465, 547
LweI GCATC 4 cut(s) 39, 118, 236, 547
MaeI CTAG 1 cut(s) 384
MalI GATC 2 cut(s) 64, 477
MboI GATC 2 cut(s) 62, 475
MboII GAAGA 4 cut(s) 255, 496, 499, 560
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 33, 570
MluCI AATT 1 cut(s) 279
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 7 cut(s) 107, 187, 195, 414, 417, 454, 593
MseI TTAA 2 cut(s) 105, 601
MspA1I CMGCKG 1 cut(s) 456
MspI CCGG 3 cut(s) 85, 167, 447
MspR9I CCNGG 2 cut(s) 86, 167
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 2 cut(s) 86, 167
NdeII GATC 2 cut(s) 62, 475
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 463
PfeI GAWTC 5 cut(s) 5, 24, 440, 529, 538
PkrI GCNGC 8 cut(s) 123, 164, 178, 373, 402, 452, 455, 562
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 2 cut(s) 376, 565
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 2 cut(s) 382, 388
RsaNI GTAC 2 cut(s) 381, 387
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 2 cut(s) 105, 601
SatI GCNGC 8 cut(s) 122, 163, 177, 372, 401, 451, 454, 561
Sau3AI GATC 2 cut(s) 62, 475
Sau96I GGNCC 1 cut(s) 235
ScaI AGTACT 2 cut(s) 382, 388
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 2 cut(s) 86, 167
SduI GDGCHC 2 cut(s) 33, 570
SetI ASST 8 cut(s) 111, 118, 198, 369, 373, 570, 582, 600
SfaNI GCATC 4 cut(s) 39, 118, 236, 547
SfcI CTRYAG 2 cut(s) 372, 561
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 1 cut(s) 279
SsiI CCGC 3 cut(s) 121, 233, 456
SspMI CTAG 1 cut(s) 384
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 2 cut(s) 84, 165
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 223, 322
TaqI TCGA 2 cut(s) 47, 218
TasI AATT 1 cut(s) 279
TatI WGTACW 2 cut(s) 380, 386
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 5 cut(s) 5, 24, 440, 529, 538
Tru1I TTAA 2 cut(s) 105, 601
Tru9I TTAA 2 cut(s) 105, 601
TscAI CASTG 1 cut(s) 414
TseI GCWGC 7 cut(s) 162, 176, 371, 400, 450, 453, 560
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 1 cut(s) 414
XapI RAATTY 1 cut(s) 279
XspI CTAG 1 cut(s) 384
ZrmI AGTACT 2 cut(s) 382, 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.