Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

55575981 .. 55576498

Gene Structure 518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014632

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAATACCCCTTCTCGCATACCTAGCGCCGGCAACGACGCTTCACAGTTATGGAAGCCTTTGAGGCTTTCTCAGCACCGAGAGCTCAAGCGCTTGGTTCCAATGGAGTCAACCGTGACCTCGACAAGGCCGGCGAATCTGCTCATGGATTCCGATACGGCTTTGGGATTCGGGCACTATGTGGTGGTTTCGATGCTTCTTTGCAGATCTGACATTGATGGTGCTGACCGAGATATTCTGGTTTTCCTTGACCTTGGAGTTTGGCGGCGTGATGCTGGCTGCGGTAGTGCGCGGTGGTACAGTCGCTGCCCGGACTTGGCTGCGAAGGATGGTAGTGAGGTGGAGAGGCGACGCAACAAGTCGAGGTTGGCTCCCGATTTTGGTACACTATGGTGGCACCGGCAGGCCAACGAAGAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.84

Weight (kDa)

8.57

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AccII	CGCG	1 cut(s)	292
AciI	CCGC	3 cut(s)	265, 282, 292
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	299, 385
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	4 cut(s)	29, 126, 316, 380
AleI	CACNNNNGTG	1 cut(s)	391
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	410
AlwNI	CAGNNNCTG	1 cut(s)	306
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	2 cut(s)	128, 405
ApeKI	GCWGC	3 cut(s)	279, 306, 320
AspLEI	GCGC	3 cut(s)	29, 93, 292
AsuC2I	CCSGG	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	177
BanI	GGYRCC	1 cut(s)	396
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	266, 293, 307
BccI	CCATC	2 cut(s)	212, 323
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	24
BfoI	RGCGCY	2 cut(s)	30, 94
BglI	GCCNNNNNGGC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	206
BisI	GCNGC	4 cut(s)	266, 280, 307, 321
BlsI	GCNGC	4 cut(s)	267, 281, 308, 322
Bme1390I	CCNGG	1 cut(s)	311
BmiI	GGNNCC	3 cut(s)	99, 372, 398
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	183, 262
BplI	GAGNNNNNCTC	4 cut(s)	55, 87, 355, 387
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 126, 316, 380
Bse118I	RCCGGY	3 cut(s)	29, 130, 399
BseDI	CCNNGG	1 cut(s)	253
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	4 cut(s)	29, 126, 316, 380
BseMII	CTCAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	266, 293, 307
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	130, 407
BshNI	GGYRCC	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	4 cut(s)	30, 131, 311, 400
BslI	CCNNNNNNNGG	4 cut(s)	29, 126, 316, 380
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	130, 407
Bsp1286I	GDGCHC	2 cut(s)	87, 177
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	3 cut(s)	265, 282, 292
BspANI	GGCC	2 cut(s)	130, 407
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	99, 372, 398
BspT107I	GGYRCC	1 cut(s)	396
BsrFI	RCCGGY	3 cut(s)	29, 130, 399
BssAI	RCCGGY	3 cut(s)	29, 130, 399
BssECI	CCNNGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	253
Bst4CI	ACNGT	3 cut(s)	48, 115, 302
Bst6I	CTCTTC	1 cut(s)	408
BstC8I	GCNNGC	4 cut(s)	31, 132, 277, 405
BstDEI	CTNAG	1 cut(s)	72
BstENI	CCTNNNNNAGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	292
BstH2I	RGCGCY	2 cut(s)	30, 94
BstHHI	GCGC	3 cut(s)	29, 93, 292
BstKTI	GATC	1 cut(s)	209
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 64, 73, 82
BstSCI	CCNGG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	266, 293, 307
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	130, 407
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	4 cut(s)	31, 132, 277, 405
CaiI	CAGNNNCTG	1 cut(s)	306
CfoI	GCGC	3 cut(s)	29, 93, 292
Cfr10I	RCCGGY	3 cut(s)	29, 130, 399
CseI	GACGC	2 cut(s)	47, 360
Csp6I	GTAC	2 cut(s)	298, 384
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	9 cut(s)	58, 67, 85, 130, 161, 279, 320, 371, 407
CviKI_1	RGCY	9 cut(s)	58, 67, 85, 130, 161, 279, 320, 371, 407
CviQI	GTAC	2 cut(s)	298, 384
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
DraIII	CACNNNGTG	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	87
Eco47III	AGCGCT	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoNI	CCTNNNNNAGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	148
FaiI	YATR	6 cut(s)	20, 52, 146, 180, 391, 421
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	266, 280, 307, 321
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	266, 280, 307, 321
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	3 cut(s)	28, 92, 291
GluI	GCNGC	4 cut(s)	266, 280, 307, 321
HaeII	RGCGCY	2 cut(s)	30, 94
HaeIII	GGCC	2 cut(s)	130, 407
HapII	CCGG	4 cut(s)	30, 131, 311, 400
HgaI	GACGC	2 cut(s)	47, 360
HhaI	GCGC	3 cut(s)	29, 93, 292
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	3 cut(s)	27, 91, 290
HinP1I	GCGC	3 cut(s)	27, 91, 290
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	4 cut(s)	107, 136, 149, 168
HpaII	CCGG	4 cut(s)	30, 131, 311, 400
Hpy166II	GTNNAC	2 cut(s)	111, 386
Hpy188I	TCNGA	2 cut(s)	154, 211
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	111, 386
Hpy99I	CGWCG	2 cut(s)	41, 354
HpyAV	CCTTC	2 cut(s)	21, 319
HpyCH4III	ACNGT	3 cut(s)	48, 115, 302
HpyCH4V	TGCA	1 cut(s)	204
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 64, 73, 82
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	3 cut(s)	27, 91, 290
KroI	GCCGGC	2 cut(s)	29, 130
KroNI	GCCGGC	2 cut(s)	31, 132
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	7 cut(s)	43, 144, 224, 261, 324, 389, 413
Lsp1109I	GCAGC	3 cut(s)	266, 293, 307
LweI	GCATC	2 cut(s)	183, 262
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	87, 177
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	5 cut(s)	57, 130, 331, 339, 357
MroNI	GCCGGC	2 cut(s)	29, 130
MslI	CAYNNNNRTG	2 cut(s)	49, 391
MspI	CCGG	4 cut(s)	30, 131, 311, 400
MspR9I	CCNGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	4 cut(s)	24, 64, 73, 82
NaeI	GCCGGC	2 cut(s)	31, 132
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	206
NgoMIV	GCCGGC	2 cut(s)	29, 130
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	3 cut(s)	99, 372, 398
NmuCI	GTSAC	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	391
PdiI	GCCGGC	2 cut(s)	31, 132
PfeI	GAWTC	3 cut(s)	136, 149, 168
PkrI	GCNGC	4 cut(s)	267, 281, 308, 322
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	87
PspN4I	GGNNCC	3 cut(s)	99, 372, 398
PstNI	CAGNNNCTG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	299, 385
RsaNI	GTAC	2 cut(s)	298, 384
RseI	CAYNNNNRTG	2 cut(s)	49, 391
SacI	GAGCTC	1 cut(s)	87
SatI	GCNGC	4 cut(s)	266, 280, 307, 321
Sau3AI	GATC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	87, 177
SetI	ASST	6 cut(s)	25, 87, 122, 255, 342, 368
SfaNI	GCATC	2 cut(s)	183, 262
SmiMI	CAYNNNNRTG	2 cut(s)	49, 391
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	3 cut(s)	265, 282, 292
SspMI	CTAG	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	48, 115, 302
TaqI	TCGA	3 cut(s)	122, 191, 362
TaqII	GACCGA	1 cut(s)	243
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	3 cut(s)	136, 149, 168
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	279, 306, 320
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	124
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.