Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

10554572 .. 10555586

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGCTTCTCTGTTATACACCAAATCAAATCCACTGGCTTCCTTCCTCCCCAAAACTAAGTTCCTTATCCAACGGCGTTGTTACGCAGCTGCGTCACATGGGCCGCTGCCAGCTGCATTGGGTAAGGGAGGGTCCAGGAGCTCTATGGTAGAAGAGTGGGTCGTGAATGCTATGAAAGAAGAATCTGGGCTTGGCTCTTCATCTTCGTGGGCCCCAGATCCCCTAACTGGATATTACAGGCCCTCCAATTGTGCGAACGAAATTGACCCGGTGGAGCTCCGAGAAATGCTATTGAAACACAGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

104

Amino Acids

11.3

Weight (kDa)

9.26

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 174, 206
AluBI	AGCT	4 cut(s)	89, 113, 141, 277
AluI	AGCT	4 cut(s)	89, 113, 141, 277
Alw21I	GWGCWC	2 cut(s)	143, 279
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	3 cut(s)	101, 210, 239
ApaI	GGGCCC	1 cut(s)	214
ApeKI	GCWGC	4 cut(s)	86, 89, 106, 113
AspS9I	GGNCC	5 cut(s)	101, 132, 210, 211, 240
AsuC2I	CCSGG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	132
BaeGI	GKGCMC	1 cut(s)	214
BanII	GRGCYC	3 cut(s)	143, 214, 279
Bbv12I	GWGCWC	2 cut(s)	143, 279
BbvI	GCAGC	4 cut(s)	76, 93, 98, 100
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	269
BisI	GCNGC	5 cut(s)	87, 90, 104, 107, 114
BlsI	GCNGC	5 cut(s)	88, 91, 105, 108, 115
Bme1390I	CCNGG	2 cut(s)	136, 269
Bme18I	GGWCC	1 cut(s)	132
BmgT120I	GGNCC	5 cut(s)	101, 132, 210, 211, 240
BmiI	GGNNCC	3 cut(s)	133, 212, 213
BmrFI	CCNGG	2 cut(s)	136, 269
BpuMI	CCSGG	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	39, 232
BseBI	CCWGG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseNI	ACTGG	2 cut(s)	39, 232
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	4 cut(s)	76, 93, 98, 100
BshFI	GGCC	3 cut(s)	103, 212, 241
BsiHKAI	GWGCWC	2 cut(s)	143, 279
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	103, 212, 241
Bsp120I	GGGCCC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	143, 214, 279
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	103, 212, 241
BspLI	GGNNCC	3 cut(s)	133, 212, 213
BspPI	GGATC	1 cut(s)	212
BspQI	GCTCTTC	1 cut(s)	202
BsrI	ACTGG	2 cut(s)	39, 232
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	147, 202
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	134, 267
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	4 cut(s)	76, 93, 98, 100
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	3 cut(s)	103, 212, 241
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	111
Cfr13I	GGNCC	5 cut(s)	101, 132, 210, 211, 240
CseI	GACGC	1 cut(s)	81
CviAII	CATG	1 cut(s)	98
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	147, 202
EarI	CTCTTC	2 cut(s)	147, 202
Ecl136II	GAGCTC	2 cut(s)	141, 277
Eco24I	GRGCYC	3 cut(s)	143, 214, 279
Eco47I	GGWCC	1 cut(s)	132
Eco53kI	GAGCTC	2 cut(s)	141, 277
EcoICRI	GAGCTC	2 cut(s)	141, 277
EcoO109I	RGGNCCY	2 cut(s)	211, 240
EcoRII	CCWGG	1 cut(s)	134
EcoT38I	GRGCYC	3 cut(s)	143, 214, 279
FaeI	CATG	1 cut(s)	101
FaiI	YATR	4 cut(s)	16, 99, 146, 173
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	5 cut(s)	87, 90, 104, 107, 114
FriOI	GRGCYC	3 cut(s)	143, 214, 279
Fsp4HI	GCNGC	5 cut(s)	87, 90, 104, 107, 114
GluI	GCNGC	5 cut(s)	87, 90, 104, 107, 114
HaeIII	GGCC	3 cut(s)	103, 212, 241
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	101
HinfI	GANTC	1 cut(s)	182
HpaII	CCGG	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	217
LguI	GCTCTTC	1 cut(s)	202
LmnI	GCTCC	3 cut(s)	138, 274, 282
LpnPI	CCDG	9 cut(s)	20, 121, 123, 148, 171, 213, 223, 228, 282
Lsp1109I	GCAGC	4 cut(s)	76, 93, 98, 100
MaeIII	GTNAC	2 cut(s)	80, 93
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	4 cut(s)	164, 189, 191, 195
MfeI	CAATTG	1 cut(s)	247
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	3 cut(s)	143, 214, 279
MluCI	AATT	2 cut(s)	247, 261
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	3 cut(s)	56, 122, 253
MslI	CAYNNNNRTG	1 cut(s)	205
MspA1I	CMGCKG	3 cut(s)	89, 106, 113
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	2 cut(s)	136, 269
MunI	CAATTG	1 cut(s)	247
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	136
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	3 cut(s)	133, 212, 213
NmuCI	GTSAC	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	202
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	88, 91, 105, 108, 115
Psp124BI	GAGCTC	2 cut(s)	143, 279
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	3 cut(s)	133, 212, 213
PspOMI	GGGCCC	1 cut(s)	210
PspPI	GGNCC	5 cut(s)	101, 132, 210, 211, 240
PsuI	RGATCY	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	89, 113
RseI	CAYNNNNRTG	1 cut(s)	205
SacI	GAGCTC	2 cut(s)	143, 279
SapI	GCTCTTC	1 cut(s)	202
SatI	GCNGC	5 cut(s)	87, 90, 104, 107, 114
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	5 cut(s)	101, 132, 210, 211, 240
ScrFI	CCNGG	2 cut(s)	136, 269
SduI	GDGCHC	3 cut(s)	143, 214, 279
SetI	ASST	4 cut(s)	91, 115, 143, 279
SinI	GGWCC	1 cut(s)	132
SmiMI	CAYNNNNRTG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	247, 261
SsiI	CCGC	1 cut(s)	104
SstI	GAGCTC	2 cut(s)	143, 279
StyD4I	CCNGG	2 cut(s)	134, 267
TasI	AATT	2 cut(s)	247, 261
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	182
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	4 cut(s)	86, 89, 106, 113
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	2 cut(s)	188, 189
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	132
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.