RLG00000028168

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002435
Physical Location & Seq
Reverse (-)
19693117 .. 19694703
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028168

Sequence Viewer

Length: 951 bp
ATGCGTGAGACCCCTTCTCGCATACCCGGCGCTTCACAGTCATGGAAGCCCTTGAGGCTTTCTCAACACCGAGCGCTCAAGCGTTTGTTTCCAGTGGAGTCCACCATGACCTCGACAAGGTGCAGCACGCTGCCCTCAACCCCTCAATCCCAAATCCGATTAGATGGATCTGCTTCTGTTCTCCGGGACCAAGTGATTGGTGATCGCTGCTTAGGTTGGTGGCGTGATGCTGGTTGTGGTAGTGCGCGGTGGTGCAGTAGCTGCCCGGACTTGGCTGCAAAGGATGGCGGTGAGGTGGAGAGGCGACACAACAAATCGGGGTTGCTCCTGGTTTTGGTACACAACGGTGGCACTAGCGGGCCAACGAAGAGACGTAGTGCTGGGCTTTGGGTGCCCATAGAGGTTGAGAGGCCCACGGTAATGGGTGTGGACTCTTGGGTGCAGTCATGGGCCCATTCTTTTTTCTCGAGCTATTGGGTTTGGGACCCGGGTGGAATGGATGAGGGTATGGGCTTCCTAGACTTCTGGACGCCTTACCTAGTGTTCAGTATTTTAAATAAGGAGACTGATGTTATCATGCGCTCGATTGATGTCGCAGATAAGCCAAGTTTTCCATTAGTTTTTAGTTTACTTTTCTTTCCCTACAGATTGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTGGGCTACTATACTGTAAGCACCTCAATTGCGAGCATTGGCGAGCAGCATAGCCGGTTTTTAATGGATGAGGATAATCTACATCACTTTGTAGTTGTTTTGTTTTCTTATTTCCAGAAAGTGAGCTTCAACTTTGTAATCGAACAACCATTCCAACGAAATATGGTCTGTTCTGCCTTAGATTTTCAATATAACTTTAGTAGGTCAATTTATGCTCCTGTGAATGTTCAGGATGCCTCTATAAACAATTGTAACCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

35.99

Weight (kDa)

7.64

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 391
AccII CGCG 1 cut(s) 247
AciI CCGC 3 cut(s) 247, 288, 357
AclWI GGATC 1 cut(s) 175
AcsI RAATTY 1 cut(s) 660
AcyI GRCGYC 1 cut(s) 530
AfaI GTAC 1 cut(s) 339
AfeI AGCGCT 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 117, 271, 334
AgsI TTSAA 3 cut(s) 676, 817, 875
AjnI CCWGG 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 345
AloI GAACNNNNNNTCC 2 cut(s) 822, 854
AluBI AGCT 3 cut(s) 261, 471, 813
AluI AGCT 3 cut(s) 261, 471, 813
Alw26I GTCTC 3 cut(s) 2, 364, 557
AlwI GGATC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 261
Ama87I CYCGRG 2 cut(s) 466, 487
Aor51HI AGCGCT 1 cut(s) 75
AoxI GGCC 3 cut(s) 359, 410, 450
ApaI GGGCCC 1 cut(s) 454
ApeKI GCWGC 6 cut(s) 123, 130, 207, 261, 275, 733
ApoI RAATTY 1 cut(s) 660
AspLEI GCGC 4 cut(s) 32, 76, 247, 582
AspS9I GGNCC 6 cut(s) 187, 359, 411, 450, 451, 484
AsuC2I CCSGG 5 cut(s) 27, 185, 266, 488, 489
AsuHPI GGTGA 2 cut(s) 212, 302
AvaI CYCGRG 2 cut(s) 466, 487
AvaII GGWCC 2 cut(s) 187, 484
BaeGI GKGCMC 2 cut(s) 396, 454
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 454
BbvI GCAGC 6 cut(s) 117, 135, 194, 248, 262, 745
BccI CCATC 3 cut(s) 158, 278, 646
BciT130I CCWGG 1 cut(s) 329
BcnI CCSGG 5 cut(s) 27, 185, 266, 488, 489
BcoDI GTCTC 3 cut(s) 2, 364, 557
BfaI CTAG 3 cut(s) 354, 518, 539
BfmI CTRYAG 1 cut(s) 643
BfoI RGCGCY 2 cut(s) 33, 77
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 6 cut(s) 124, 131, 208, 262, 276, 734
BlsI GCNGC 6 cut(s) 125, 132, 209, 263, 277, 735
Bme1390I CCNGG 6 cut(s) 27, 185, 266, 329, 488, 489
Bme18I GGWCC 2 cut(s) 187, 484
BmeT110I CYCGRG 2 cut(s) 466, 487
BmgT120I GGNCC 6 cut(s) 187, 359, 411, 450, 451, 484
BmiI GGNNCC 5 cut(s) 188, 393, 452, 485, 486
BmrFI CCNGG 6 cut(s) 27, 185, 266, 329, 488, 489
BmsI GCATC 2 cut(s) 217, 910
BplI GAGNNNNNCTC 2 cut(s) 46, 78
Bpu10I CCTNAGC 1 cut(s) 211
BpuEI CTTGAG 2 cut(s) 62, 73
BpuMI CCSGG 5 cut(s) 27, 185, 266, 488, 489
BsaHI GRCGYC 1 cut(s) 530
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 2 cut(s) 414, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 271, 334
Bse118I RCCGGY 1 cut(s) 741
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 414, 487
BseGI GGATG 4 cut(s) 289, 505, 760, 925
BseLI CCNNNNNNNGG 3 cut(s) 117, 271, 334
BseNI ACTGG 1 cut(s) 92
BseSI GKGCMC 2 cut(s) 396, 454
BseXI GCAGC 6 cut(s) 117, 135, 194, 248, 262, 745
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 3 cut(s) 142, 274, 461
Bsh1236I CGCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 361, 412, 452
BshNI GGYRCC 1 cut(s) 391
BsiHKCI CYCGRG 2 cut(s) 466, 487
BsiSI CCGG 5 cut(s) 27, 184, 266, 488, 742
BslFI GGGAC 2 cut(s) 200, 497
BslI CCNNNNNNNGG 3 cut(s) 117, 271, 334
BsmAI GTCTC 3 cut(s) 2, 364, 557
BsmBI CGTCTC 1 cut(s) 364
BsmFI GGGAC 2 cut(s) 200, 497
BsnI GGCC 3 cut(s) 361, 412, 452
Bso31I GGTCTC 1 cut(s) 2
BsoBI CYCGRG 2 cut(s) 466, 487
Bsp120I GGGCCC 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 396, 454
Bsp143I GATC 2 cut(s) 167, 202
BspACI CCGC 3 cut(s) 247, 288, 357
BspANI GGCC 3 cut(s) 361, 412, 452
BspFNI CGCG 1 cut(s) 247
BspLI GGNNCC 5 cut(s) 188, 393, 452, 485, 486
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 391
BspTNI GGTCTC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 741
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 741
BssECI CCNNGG 2 cut(s) 414, 487
BssMI GATC 2 cut(s) 167, 202
BssNI GRCGYC 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 4 cut(s) 39, 347, 418, 703
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 530
BstAPI GCANNNNNTGC 1 cut(s) 261
BstC8I GCNNGC 4 cut(s) 128, 359, 721, 731
BstDEI CTNAG 2 cut(s) 211, 865
BstDSI CCRYGG 1 cut(s) 414
BstENI CCTNNNNNAGG 1 cut(s) 115
BstF5I GGATG 4 cut(s) 289, 505, 760, 925
BstFNI CGCG 1 cut(s) 247
BstH2I RGCGCY 2 cut(s) 33, 77
BstHHI GCGC 4 cut(s) 32, 76, 247, 582
BstKTI GATC 2 cut(s) 170, 205
BstMAI GTCTC 3 cut(s) 2, 364, 557
BstMBI GATC 2 cut(s) 167, 202
BstMWI GCNNNNNNNGC 4 cut(s) 27, 55, 261, 391
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 6 cut(s) 25, 183, 264, 327, 486, 487
BstSFI CTRYAG 1 cut(s) 643
BstSLI GKGCMC 2 cut(s) 396, 454
BstUI CGCG 1 cut(s) 247
BstV1I GCAGC 6 cut(s) 117, 135, 194, 248, 262, 745
BstX2I RGATCY 1 cut(s) 167
BstXI CCANNNNNNTGG 2 cut(s) 197, 421
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 3 cut(s) 361, 412, 452
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 4 cut(s) 289, 505, 760, 925
BtsIMutI CAGTG 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 128, 359, 721, 731
CaiI CAGNNNCTG 1 cut(s) 261
CfoI GCGC 4 cut(s) 32, 76, 247, 582
Cfr10I RCCGGY 1 cut(s) 741
Cfr13I GGNCC 6 cut(s) 187, 359, 411, 450, 451, 484
Cfr9I CCCGGG 1 cut(s) 487
CseI GACGC 1 cut(s) 538
Csp6I GTAC 1 cut(s) 338
CviAII CATG 4 cut(s) 42, 106, 447, 577
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 211, 865
DpnI GATC 2 cut(s) 169, 204
DpnII GATC 2 cut(s) 167, 202
DraI TTTAAA 1 cut(s) 555
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 2
Eco47I GGWCC 2 cut(s) 187, 484
Eco47III AGCGCT 1 cut(s) 75
Eco88I CYCGRG 2 cut(s) 466, 487
EcoNI CCTNNNNNAGG 1 cut(s) 115
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 327
EcoT38I GRGCYC 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 364
FaeI CATG 4 cut(s) 45, 109, 450, 580
FaqI GGGAC 2 cut(s) 200, 497
FatI CATG 4 cut(s) 41, 105, 446, 576
FauI CCCGC 1 cut(s) 350
Fnu4HI GCNGC 6 cut(s) 124, 131, 208, 262, 276, 734
FokI GGATG 4 cut(s) 296, 512, 767, 932
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 6 cut(s) 124, 131, 208, 262, 276, 734
FspBI CTAG 3 cut(s) 354, 518, 539
GlaI GCGC 4 cut(s) 31, 75, 246, 581
GluI GCNGC 6 cut(s) 124, 131, 208, 262, 276, 734
GsaI CCCAGC 1 cut(s) 384
HaeII RGCGCY 2 cut(s) 33, 77
HaeIII GGCC 3 cut(s) 361, 412, 452
HapII CCGG 5 cut(s) 27, 184, 266, 488, 742
HgaI GACGC 1 cut(s) 538
HhaI GCGC 4 cut(s) 32, 76, 247, 582
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 4 cut(s) 45, 109, 450, 580
Hin6I GCGC 4 cut(s) 30, 74, 245, 580
HinP1I GCGC 4 cut(s) 30, 74, 245, 580
HinfI GANTC 3 cut(s) 98, 431, 680
HpaII CCGG 5 cut(s) 27, 184, 266, 488, 742
HphI GGTGA 2 cut(s) 212, 302
Hpy166II GTNNAC 4 cut(s) 102, 340, 430, 629
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 466, 526, 802, 917
Hpy8I GTNNAC 4 cut(s) 102, 340, 430, 629
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 4 cut(s) 39, 347, 418, 703
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 4 cut(s) 123, 255, 278, 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 55, 261, 391
HpyF3I CTNAG 2 cut(s) 211, 865
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 4 cut(s) 45, 109, 450, 580
HspAI GCGC 4 cut(s) 30, 74, 245, 580
KflI GGGWCCC 1 cut(s) 484
Kzo9I GATC 2 cut(s) 167, 202
LmnI GCTCC 2 cut(s) 330, 907
Lsp1109I GCAGC 6 cut(s) 117, 135, 194, 248, 262, 745
LweI GCATC 2 cut(s) 217, 910
MaeI CTAG 3 cut(s) 354, 518, 539
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 938
MalI GATC 2 cut(s) 169, 204
MboI GATC 2 cut(s) 167, 202
MboII GAAGA 1 cut(s) 379
MfeI CAATTG 2 cut(s) 714, 934
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 2 cut(s) 396, 454
MluCI AATT 4 cut(s) 660, 714, 894, 934
MlyI GAGTC 3 cut(s) 107, 425, 689
MmeI TCCRAC 1 cut(s) 865
MseI TTAA 2 cut(s) 554, 749
MslI CAYNNNNRTG 3 cut(s) 40, 345, 419
MspI CCGG 5 cut(s) 27, 184, 266, 488, 742
MspR9I CCNGG 6 cut(s) 27, 185, 266, 329, 488, 489
MunI CAATTG 2 cut(s) 714, 934
MvaI CCWGG 1 cut(s) 329
MvnI CGCG 1 cut(s) 247
MwoI GCNNNNNNNGC 4 cut(s) 27, 55, 261, 391
NciI CCSGG 5 cut(s) 27, 185, 266, 488, 489
NdeII GATC 2 cut(s) 167, 202
NlaIII CATG 4 cut(s) 45, 109, 450, 580
NlaIV GGNNCC 5 cut(s) 188, 393, 452, 485, 486
OliI CACNNNNGTG 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 6 cut(s) 125, 132, 209, 263, 277, 735
PleI GAGTC 3 cut(s) 106, 425, 688
PpsI GAGTC 3 cut(s) 106, 425, 688
PpuMI RGGWCCY 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 327
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 1 cut(s) 327
PspN4I GGNNCC 5 cut(s) 188, 393, 452, 485, 486
PspOMI GGGCCC 1 cut(s) 450
PspPI GGNCC 6 cut(s) 187, 359, 411, 450, 451, 484
PspPPI RGGWCCY 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 261
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 3 cut(s) 40, 345, 419
SaqAI TTAA 2 cut(s) 554, 749
SatI GCNGC 6 cut(s) 124, 131, 208, 262, 276, 734
Sau3AI GATC 2 cut(s) 167, 202
Sau96I GGNCC 6 cut(s) 187, 359, 411, 450, 451, 484
SchI GAGTC 3 cut(s) 107, 425, 689
ScrFI CCNGG 6 cut(s) 27, 185, 266, 329, 488, 489
SduI GDGCHC 2 cut(s) 396, 454
SfaNI GCATC 2 cut(s) 217, 910
SfcI CTRYAG 1 cut(s) 643
Sfr274I CTCGAG 1 cut(s) 466
SinI GGWCC 2 cut(s) 187, 484
SlaI CTCGAG 1 cut(s) 466
SmaI CCCGGG 1 cut(s) 489
SmiMI CAYNNNNRTG 3 cut(s) 40, 345, 419
SmlI CTYRAG 3 cut(s) 52, 77, 466
SmoI CTYRAG 3 cut(s) 52, 77, 466
Sse9I AATT 4 cut(s) 660, 714, 894, 934
SsiI CCGC 3 cut(s) 247, 288, 357
SspMI CTAG 3 cut(s) 354, 518, 539
StyD4I CCNGG 6 cut(s) 25, 183, 264, 327, 486, 487
TaaI ACNGT 4 cut(s) 39, 347, 418, 703
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 113, 467, 584, 828
TasI AATT 4 cut(s) 660, 714, 894, 934
Tru1I TTAA 2 cut(s) 554, 749
Tru9I TTAA 2 cut(s) 554, 749
TscAI CASTG 1 cut(s) 99
TseI GCWGC 6 cut(s) 123, 130, 207, 261, 275, 733
TspMI CCCGGG 1 cut(s) 487
TspRI CASTG 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 187, 484
XagI CCTNNNNNAGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 660
XhoI CTCGAG 1 cut(s) 466
XmaI CCCGGG 1 cut(s) 487
XspI CTAG 3 cut(s) 354, 518, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.