Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

46391424 .. 46398767

Gene Structure 7344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTTCCCGTCTCTCAAAAGCAAATCTCCTTCCCCTTGCCGTCTCCATTCATCGACCAGGTTACGCGGCTGCATCACATGGCTCGGTGGCAGCTGGATATGGAATGGCGGGGGTCCGGGAGTGCTATGCGTGGCGTAACCCTTTTAGCGTGAATAGTGATCGTAATCTTCCAGCCGCCAGTTCTTCCTCCATGCTTCAAATCGCCGCACAAGATTCGGGGGTAGCATCTACATCCCAAGGCGCTTCCAAAGAACCGAACTTTATCGTTCGGGGTGGCCGGAATCGGAAGAAAATGGCGTTGACTCAAACTGCTACAGTAAACTTCCCGGTGCTCGATGCGTCTTTTTCCGGCCAAGACACCGTGAATGGTCGCCTTAGGGAGGTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

130

Amino Acids

13.61

Weight (kDa)

10.35

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	68
AciI	CCGC	4 cut(s)	68, 110, 177, 207
AcoI	YGGCCR	2 cut(s)	277, 352
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	17, 49
AoxI	GGCC	2 cut(s)	277, 352
ApeKI	GCWGC	2 cut(s)	71, 92
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	2 cut(s)	119, 329
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	58, 104
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BciT130I	CCWGG	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	119, 329
BcoDI	GTCTC	2 cut(s)	17, 49
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	5 cut(s)	69, 72, 93, 177, 207
BlsI	GCNGC	5 cut(s)	70, 73, 94, 178, 208
Bme1390I	CCNGG	3 cut(s)	60, 119, 329
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	60, 119, 329
BmsI	GCATC	3 cut(s)	83, 236, 328
BpuMI	CCSGG	2 cut(s)	119, 329
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	238
BsaXI	ACNNNNNCTCC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	180
Bse21I	CCTNAGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	58, 104
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	279, 354
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	118, 280, 329, 351
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	17, 49
BsmBI	CGTCTC	2 cut(s)	17, 49
BsnI	GGCC	2 cut(s)	279, 354
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	4 cut(s)	68, 110, 177, 207
BspANI	GGCC	2 cut(s)	279, 354
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	2 cut(s)	319, 364
BstDEI	CTNAG	1 cut(s)	377
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	68
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	17, 49
BstMBI	GATC	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	58, 117, 327
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	58, 104
Bsu36I	CCTNAGG	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	279, 354
BtsCI	GGATG	1 cut(s)	233
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	330
CsiI	ACCWGGT	1 cut(s)	58
CviAII	CATG	2 cut(s)	80, 193
CviJI	RGCY	7 cut(s)	5, 71, 84, 95, 176, 279, 354
CviKI_1	RGCY	7 cut(s)	5, 71, 84, 95, 176, 279, 354
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	2 cut(s)	277, 352
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	115
Eco81I	CCTNAGG	1 cut(s)	377
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
Esp3I	CGTCTC	2 cut(s)	17, 49
FaeI	CATG	2 cut(s)	83, 196
FaiI	YATR	4 cut(s)	81, 102, 129, 194
FatI	CATG	2 cut(s)	79, 192
FauI	CCCGC	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	69, 72, 93, 177, 207
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	5 cut(s)	69, 72, 93, 177, 207
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	5 cut(s)	69, 72, 93, 177, 207
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	279, 354
HapII	CCGG	4 cut(s)	118, 280, 329, 351
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	83, 196
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	3 cut(s)	215, 283, 304
HpaII	CCGG	4 cut(s)	118, 280, 329, 351
Hpy166II	GTNNAC	2 cut(s)	303, 322
Hpy188I	TCNGA	1 cut(s)	288
Hpy8I	GTNNAC	2 cut(s)	303, 322
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	319, 364
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	83, 196
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	45, 72, 81, 131, 186, 193, 293, 342, 364
Lsp1109I	GCAGC	2 cut(s)	58, 104
LweI	GCATC	3 cut(s)	83, 236, 328
MabI	ACCWGGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	62, 137
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	161, 177, 301
MhlI	GDGCHC	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	2 cut(s)	199, 376
MspA1I	CMGCKG	1 cut(s)	95
MspI	CCGG	4 cut(s)	118, 280, 329, 351
MspR9I	CCNGG	3 cut(s)	60, 119, 329
MvaI	CCWGG	1 cut(s)	60
MvnI	CGCG	1 cut(s)	68
NciI	CCSGG	2 cut(s)	119, 329
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	83, 196
NlaIV	GGNNCC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	215, 283
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	70, 73, 94, 178, 208
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	95
SatI	GCNGC	5 cut(s)	69, 72, 93, 177, 207
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	3 cut(s)	60, 119, 329
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	3 cut(s)	64, 97, 387
SexAI	ACCWGGT	1 cut(s)	58
SfaNI	GCATC	3 cut(s)	83, 236, 328
SfcI	CTRYAG	1 cut(s)	315
SinI	GGWCC	1 cut(s)	115
SsiI	CCGC	4 cut(s)	68, 110, 177, 207
StyD4I	CCNGG	3 cut(s)	58, 117, 327
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	319, 364
TaqI	TCGA	2 cut(s)	55, 336
TauI	GCSGC	3 cut(s)	71, 179, 209
TfiI	GAWTC	2 cut(s)	215, 283
TseI	GCWGC	2 cut(s)	71, 92
TspDTI	ATGAA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	115
XagI	CCTNNNNNAGG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.