Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

44937560 .. 44938294

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTTTGGGATCCGGGCACTATGTGGTGGTTTCGATACTTCTTTGTAGATCTGACATTGATGGTGCTGACCGGGATATTCTGGTTTTCCTCGACCTTGGAGGTTGGTGGCGTGATGCTGGTTGTGGTAGTGTGCGGTGGTGCAGTCACTGCCCAGACTTGGCTGAGAAGGATGGCGATAAGGTGGAGAGGCGACACAACAAATCGGGGTTGGCTCCCGATTTTGGTACAAGACGGTGGCACTGGCAGGCCAACGAAGAGACATTGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTAGGCTACTATACTGTAAGCACCTCAATTGTGAGCATGGGCGAGCAGCATAACCGGTTTTTAATGGAAGAGGATAATCTACATCACGTTGTAGTTGTTTTGTTTTCTTATTTCCAGAAAGTGAGCTTCAACTTTGTAATCGAACAACCATTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

5.41

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	2 cut(s)	6, 19
AcsI	RAATTY	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	2 cut(s)	160, 224
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	292, 433
AloI	GAACNNNNNNTCC	1 cut(s)	438
AluBI	AGCT	1 cut(s)	429
AluI	AGCT	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	6, 19
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	357
AsuC2I	CCSGG	2 cut(s)	16, 74
BaeGI	GKGCMC	1 cut(s)	21
BamHI	GGATCC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	3 cut(s)	56, 167, 262
BcnI	CCSGG	2 cut(s)	16, 74
BcoDI	GTCTC	1 cut(s)	254
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	16, 74
BmiI	GGNNCC	2 cut(s)	13, 216
BmrFI	CCNGG	2 cut(s)	16, 74
BmsI	GCATC	1 cut(s)	106
BpuMI	CCSGG	2 cut(s)	16, 74
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 224
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	160, 224
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	1 cut(s)	248
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	251
BshTI	ACCGGT	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	15, 73, 358
BslI	CCNNNNNNNGG	2 cut(s)	160, 224
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	11, 50
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	13, 216
BspPI	GGATC	2 cut(s)	6, 19
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	11, 50
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	237, 319
Bst6I	CTCTTC	2 cut(s)	252, 366
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	249, 347
BstDEI	CTNAG	2 cut(s)	165, 304
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	2 cut(s)	14, 53
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	11, 50
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	14, 72
BstSLI	GKGCMC	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	11, 50
BstYI	RGATCY	2 cut(s)	11, 50
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 241
Cac8I	GCNNGC	2 cut(s)	249, 347
CaiI	CAGNNNCTG	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	228
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	6 cut(s)	5, 164, 215, 251, 309, 429
CviKI_1	RGCY	6 cut(s)	5, 164, 215, 251, 309, 429
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	165, 304
DpnI	GATC	2 cut(s)	13, 52
DpnII	GATC	2 cut(s)	11, 50
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	252, 366
EarI	CTCTTC	2 cut(s)	252, 366
Eco130I	CCWWGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	343
FaiI	YATR	4 cut(s)	24, 315, 341, 354
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	3 cut(s)	15, 73, 358
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	3 cut(s)	15, 73, 358
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	2 cut(s)	218, 418
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	2 cut(s)	237, 319
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	2 cut(s)	165, 304
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	11, 50
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	9 cut(s)	28, 68, 86, 105, 168, 229, 233, 371, 431
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	2 cut(s)	13, 52
MboI	GATC	2 cut(s)	11, 50
MboII	GAAGA	2 cut(s)	269, 383
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	2 cut(s)	11, 50
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	2 cut(s)	276, 330
MlyI	GAGTC	1 cut(s)	305
MnlI	CCTC	5 cut(s)	95, 101, 183, 337, 367
MseI	TTAA	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	3 cut(s)	15, 73, 358
MspR9I	CCNGG	2 cut(s)	16, 74
MunI	CAATTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	150
NciI	CCSGG	2 cut(s)	16, 74
NdeII	GATC	2 cut(s)	11, 50
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	2 cut(s)	13, 216
NmuCI	GTSAC	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	13, 216
PstNI	CAGNNNCTG	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	11, 50
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	365
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	11, 50
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	16, 74
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	6 cut(s)	99, 106, 186, 329, 393, 431
SfaNI	GCATC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	457
Sse9I	AATT	2 cut(s)	276, 330
SsiI	CCGC	1 cut(s)	136
StyD4I	CCNGG	2 cut(s)	14, 72
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	237, 319
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	3 cut(s)	35, 93, 444
TasI	AATT	2 cut(s)	276, 330
Tru1I	TTAA	1 cut(s)	365
Tru9I	TTAA	1 cut(s)	365
TscAI	CASTG	2 cut(s)	155, 248
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	2 cut(s)	155, 248
XapI	RAATTY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.