Rh2DG480700

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002435
Physical Location & Seq
Forward (+)
69502780 .. 69521042
18263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG480700.1

Sequence Viewer

Length: 351 bp
ATGGCCAAGGTTCCCATGAACCCATTTTTCCTTCTCAGCAAGAGATGGTATAAGGTAGCTGCAGAGAGTACTAGTACTGAAAGAGTGCAGCCGGCAGTGTCAACAATGAGGAGGATGGCAACAACGGAATCCTCCGGCAGCAGCGGTCGAGCTGTCGCAGATGATCAGGAGAAGAAGAAAGTGTTTTGGATGAGAGACCCAAAGACGGGGAACTGGATTCCAGAGAATCACTTTGAAGAGATTGATGCTGCAGAGCTCAGGGAGAAGCTCCTCAACAAGCACAAGCATCACAAAGGCCAAGTGCCTCTAGCAAAAGCCAATTGCCAAAATGCATCACTGGTATTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

116

Amino Acids

13.29

Weight (kDa)

9.67

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 13 - 94 5.1e-18 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 70, 76
AfiI CCNNNNNNNGG 2 cut(s) 205, 206
AgsI TTSAA 1 cut(s) 236
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 4 cut(s) 59, 152, 256, 268
AluI AGCT 4 cut(s) 59, 152, 256, 268
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 1 cut(s) 189
AoxI GGCC 2 cut(s) 3, 295
ApeKI GCWGC 5 cut(s) 59, 88, 138, 141, 248
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 5 cut(s) 46, 100, 150, 153, 235
BccI CCATC 2 cut(s) 39, 109
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 308
BfmI CTRYAG 2 cut(s) 60, 249
BisI GCNGC 5 cut(s) 60, 89, 139, 142, 249
BlsI GCNGC 5 cut(s) 61, 90, 140, 143, 250
BmcAI AGTACT 2 cut(s) 70, 76
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 3 cut(s) 235, 295, 341
Bpu10I CCTNAGC 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 206
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 218, 342
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 120, 195
BseLI CCNNNNNNNGG 2 cut(s) 205, 206
BseMII CTCAG 2 cut(s) 49, 271
BseNI ACTGG 2 cut(s) 218, 342
BseRI GAGGAG 2 cut(s) 124, 260
BseXI GCAGC 5 cut(s) 46, 100, 150, 153, 235
BsgI GTGCAG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 2 cut(s) 5, 297
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 2 cut(s) 92, 135
BslI CCNNNNNNNGG 2 cut(s) 205, 206
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 2 cut(s) 5, 297
Bso31I GGTCTC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 144
BspANI GGCC 2 cut(s) 5, 297
BspCNI CTCAG 2 cut(s) 48, 270
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 2 cut(s) 64, 253
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 2 cut(s) 218, 342
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 6
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 35, 257
BstF5I GGATG 2 cut(s) 120, 195
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 60, 249
BstV1I GCAGC 5 cut(s) 46, 100, 150, 153, 235
BsuRI GGCC 2 cut(s) 5, 297
BtsCI GGATG 2 cut(s) 120, 195
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 335
Cac8I GCNNGC 1 cut(s) 93
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 2 cut(s) 69, 75
CviAII CATG 1 cut(s) 16
CviJI RGCY 8 cut(s) 5, 59, 91, 152, 256, 268, 297, 317
CviKI_1 RGCY 8 cut(s) 5, 59, 91, 152, 256, 268, 297, 317
CviQI GTAC 2 cut(s) 69, 75
DdeI CTNAG 2 cut(s) 35, 257
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 256
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 189
Eco53kI GAGCTC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 6
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 51
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 5 cut(s) 60, 89, 139, 142, 249
FokI GGATG 2 cut(s) 127, 202
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 5 cut(s) 60, 89, 139, 142, 249
FspBI CTAG 2 cut(s) 72, 308
GluI GCNGC 5 cut(s) 60, 89, 139, 142, 249
HaeIII GGCC 2 cut(s) 5, 297
HapII CCGG 2 cut(s) 92, 135
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 3 cut(s) 128, 217, 226
HpaII CCGG 2 cut(s) 92, 135
Hpy166II GTNNAC 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 167, 221
Hpy8I GTNNAC 1 cut(s) 102
HpyAV CCTTC 1 cut(s) 41
HpyCH4V TGCA 4 cut(s) 62, 88, 251, 332
HpyF3I CTNAG 2 cut(s) 35, 257
Hsp92II CATG 1 cut(s) 19
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 273
LpnPI CCDG 8 cut(s) 105, 148, 152, 199, 234, 244, 323, 331
Lsp1109I GCAGC 5 cut(s) 46, 100, 150, 153, 235
LweI GCATC 3 cut(s) 235, 295, 341
MaeI CTAG 2 cut(s) 72, 308
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 184, 187, 248
MfeI CAATTG 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 102, 105, 142, 281, 315
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 334
MroNI GCCGGC 1 cut(s) 91
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 92, 135
MunI CAATTG 1 cut(s) 319
NaeI GCCGGC 1 cut(s) 93
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 334
PdiI GCCGGC 1 cut(s) 93
PfeI GAWTC 3 cut(s) 128, 217, 226
PkrI GCNGC 5 cut(s) 61, 90, 140, 143, 250
Psp124BI GAGCTC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 12
PstI CTGCAG 2 cut(s) 64, 253
RsaI GTAC 2 cut(s) 70, 76
RsaNI GTAC 2 cut(s) 69, 75
SacI GAGCTC 1 cut(s) 258
SatI GCNGC 5 cut(s) 60, 89, 139, 142, 249
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 2 cut(s) 70, 76
SduI GDGCHC 1 cut(s) 258
SetI ASST 6 cut(s) 12, 57, 61, 154, 258, 270
SfaNI GCATC 3 cut(s) 235, 295, 341
SfcI CTRYAG 2 cut(s) 60, 249
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 1 cut(s) 319
SsiI CCGC 1 cut(s) 144
SspMI CTAG 2 cut(s) 72, 308
SstI GAGCTC 1 cut(s) 258
StyI CCWWGG 1 cut(s) 6
TaqI TCGA 1 cut(s) 148
TasI AATT 1 cut(s) 319
TatI WGTACW 2 cut(s) 68, 74
TfiI GAWTC 3 cut(s) 128, 217, 226
TscAI CASTG 2 cut(s) 102, 342
TseI GCWGC 5 cut(s) 59, 88, 138, 141, 248
TspDTI ATGAA 1 cut(s) 32
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 102, 342
XspI CTAG 2 cut(s) 72, 308
ZrmI AGTACT 2 cut(s) 70, 76
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.