Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

22730333 .. 22730832

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTACAGCGCGAGACCCCTTCTCGCATACCTAGAGCCGGCAATGGTGCTTCACCGCCATGGAAGCCTCTGAGGCTTTCCGAACACCGAGCGCTCAGGCGCTTCCTACTAGTGGAGTCCATGTCACCTCGACAAAGTGCAGCATGCAGCCCTCAAGCCCTCAATCCTAAATCCGATCAGATGGATCTATTTTTGCTCTCCGGGACCAAGCGATCAGTGATCTCTACTTGGGCCGGCTTGATATTCTGGTTATCCTCAACTTTGGAGGTTGGCGACGTGATGCTAGTTGGGGCAGTGCTAATGCGGAGCGGCGGTGCTAGGGATCAGGATGAGCTTCTTAGGCCGCTAGTTGGGCCTGGAGCATTGAAGATTGATTATGGGCCTATTTTTCTTGGTCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.64

Weight (kDa)

10.25

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	309
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	56, 304, 309, 312, 344
AclWI	GGATC	2 cut(s)	192, 330
AfaI	GTAC	1 cut(s)	6
AfeI	AGCGCT	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	38, 112, 350
AgsI	TTSAA	1 cut(s)	367
AhlI	ACTAGT	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	8
AlwI	GGATC	2 cut(s)	192, 330
Aor51HI	AGCGCT	1 cut(s)	93
AoxI	GGCC	4 cut(s)	231, 341, 353, 380
ApeKI	GCWGC	2 cut(s)	140, 147
AspLEI	GCGC	3 cut(s)	12, 94, 102
AspS9I	GGNCC	5 cut(s)	204, 231, 353, 380, 395
AsuC2I	CCSGG	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	45, 117
AvaII	GGWCC	2 cut(s)	204, 395
BbvI	GCAGC	2 cut(s)	152, 159
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	8
BcuI	ACTAGT	1 cut(s)	109
BfaI	CTAG	5 cut(s)	33, 110, 284, 318, 347
BfoI	RGCGCY	2 cut(s)	95, 103
BglI	GCCNNNNNGGC	1 cut(s)	73
BisI	GCNGC	4 cut(s)	141, 148, 310, 344
BlsI	GCNGC	4 cut(s)	142, 149, 311, 345
Bme1390I	CCNGG	2 cut(s)	202, 357
Bme18I	GGWCC	2 cut(s)	204, 395
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	5 cut(s)	204, 231, 353, 380, 395
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	2 cut(s)	202, 357
BmsI	GCATC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	59
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 137, 298, 328
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 112, 350
Bse118I	RCCGGY	2 cut(s)	38, 233
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	38, 112, 350
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	2 cut(s)	62, 109
BseXI	GCAGC	2 cut(s)	152, 159
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	4 cut(s)	233, 343, 355, 382
BsiSI	CCGG	3 cut(s)	39, 201, 234
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	38, 112, 350
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	4 cut(s)	233, 343, 355, 382
Bso31I	GGTCTC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	175, 184, 212, 219, 322
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	5 cut(s)	56, 304, 309, 312, 344
BspANI	GGCC	4 cut(s)	233, 343, 355, 382
BspCNI	CTCAG	2 cut(s)	63, 108
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	192, 330
BspTNI	GGTCTC	1 cut(s)	8
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	2 cut(s)	38, 233
BssAI	RCCGGY	2 cut(s)	38, 233
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	5 cut(s)	175, 184, 212, 219, 322
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	357
BstC8I	GCNNGC	3 cut(s)	40, 145, 235
BstDEI	CTNAG	3 cut(s)	71, 95, 338
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	2 cut(s)	95, 103
BstHHI	GCGC	3 cut(s)	12, 94, 102
BstKTI	GATC	5 cut(s)	178, 187, 215, 222, 325
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	5 cut(s)	175, 184, 212, 219, 322
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 73, 340, 352
BstNI	CCWGG	1 cut(s)	357
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	2 cut(s)	200, 355
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	152, 159
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	233, 343, 355, 382
BtgI	CCRYGG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	222, 300
Cac8I	GCNNGC	3 cut(s)	40, 145, 235
CfoI	GCGC	3 cut(s)	12, 94, 102
Cfr10I	RCCGGY	2 cut(s)	38, 233
Cfr13I	GGNCC	5 cut(s)	204, 231, 353, 380, 395
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	3 cut(s)	60, 121, 144
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	3 cut(s)	71, 95, 338
DpnI	GATC	5 cut(s)	177, 186, 214, 221, 324
DpnII	GATC	5 cut(s)	175, 184, 212, 219, 322
Eco130I	CCWWGG	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	204, 395
Eco47III	AGCGCT	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	3 cut(s)	63, 124, 147
FaiI	YATR	5 cut(s)	29, 61, 122, 145, 378
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	3 cut(s)	59, 120, 143
Fnu4HI	GCNGC	4 cut(s)	141, 148, 310, 344
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	4 cut(s)	141, 148, 310, 344
FspBI	CTAG	5 cut(s)	33, 110, 284, 318, 347
GlaI	GCGC	3 cut(s)	11, 93, 101
GluI	GCNGC	4 cut(s)	141, 148, 310, 344
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	2 cut(s)	95, 103
HaeIII	GGCC	4 cut(s)	233, 343, 355, 382
HapII	CCGG	3 cut(s)	39, 201, 234
HhaI	GCGC	3 cut(s)	12, 94, 102
Hin1II	CATG	3 cut(s)	63, 124, 147
Hin6I	GCGC	3 cut(s)	10, 92, 100
HinP1I	GCGC	3 cut(s)	10, 92, 100
HinfI	GANTC	1 cut(s)	116
HpaII	CCGG	3 cut(s)	39, 201, 234
HphI	GGTGA	2 cut(s)	45, 117
Hpy188I	TCNGA	4 cut(s)	72, 82, 175, 180
Hpy188III	TCNNGA	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	140, 147
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 73, 340, 352
HpyF3I	CTNAG	3 cut(s)	71, 95, 338
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	63, 124, 147
HspAI	GCGC	3 cut(s)	10, 92, 100
KroI	GCCGGC	2 cut(s)	38, 233
KroNI	GCCGGC	2 cut(s)	40, 235
Kzo9I	GATC	5 cut(s)	175, 184, 212, 219, 322
LmnI	GCTCC	2 cut(s)	306, 359
LpnPI	CCDG	8 cut(s)	52, 82, 214, 232, 247, 311, 342, 369
Lsp1109I	GCAGC	2 cut(s)	152, 159
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	5 cut(s)	33, 110, 284, 318, 347
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	5 cut(s)	177, 186, 214, 221, 324
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	5 cut(s)	175, 184, 212, 219, 322
MboII	GAAGA	1 cut(s)	379
MflI	RGATCY	1 cut(s)	184
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	7 cut(s)	66, 78, 138, 162, 170, 259, 265
MroNI	GCCGGC	2 cut(s)	38, 233
MslI	CAYNNNNRTG	1 cut(s)	58
MspI	CCGG	3 cut(s)	39, 201, 234
MspR9I	CCNGG	2 cut(s)	202, 357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	4 cut(s)	64, 73, 340, 352
NaeI	GCCGGC	2 cut(s)	40, 235
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	5 cut(s)	175, 184, 212, 219, 322
NgoMIV	GCCGGC	2 cut(s)	38, 233
NlaIII	CATG	3 cut(s)	63, 124, 147
NlaIV	GGNNCC	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	123
NspI	RCATGY	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	147
PdiI	GCCGGC	2 cut(s)	40, 235
PfoI	TCCNGGA	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	142, 149, 311, 345
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	5 cut(s)	204, 231, 353, 380, 395
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	58
SatI	GCNGC	4 cut(s)	141, 148, 310, 344
Sau3AI	GATC	5 cut(s)	175, 184, 212, 219, 322
Sau96I	GGNCC	5 cut(s)	204, 231, 353, 380, 395
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	202, 357
SetI	ASST	5 cut(s)	34, 130, 270, 279, 336
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	2 cut(s)	204, 395
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	109
SphI	GCATGC	1 cut(s)	147
SsiI	CCGC	5 cut(s)	56, 304, 309, 312, 344
SspMI	CTAG	5 cut(s)	33, 110, 284, 318, 347
StyD4I	CCNGG	2 cut(s)	200, 355
StyI	CCWWGG	1 cut(s)	59
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	130
TauI	GCSGC	2 cut(s)	312, 346
TscAI	CASTG	2 cut(s)	222, 300
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	2 cut(s)	140, 147
Tsp45I	GTSAC	1 cut(s)	123
TspRI	CASTG	2 cut(s)	222, 300
VpaK11BI	GGWCC	2 cut(s)	204, 395
XceI	RCATGY	1 cut(s)	147
XspI	CTAG	5 cut(s)	33, 110, 284, 318, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.