Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Forward (+)

57722269 .. 57723258

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019868

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCGTGAGACTGCTTCTCGCATACTTAGCGCCGGCAACGGCGCTTCACAGCCATGGAAGCCCTTGAGGCTTTCTCAACACCGAGCGCTCAAGCGTTTGTTTCCAGTGGAGTCCACCGTGACCTCGACAAGGTGCAGCACGCTGCCCTCAACCCCTCAATCCCAAATCCGATTAGATGGATCTGCTTCTGTTCTCCGGGACCAAGCAATTCGTGATCGCTGCTTAGGCCGGCGAATCTGCTCATGGATTCCGATACGGCTTTGGGATCCGGGCACTATGTGGTGGTTTCGATGCTTCTTTGTAGATCTGACATTGATGGTGCTGACCGGGATATTCTGGTTTTCCTCGACCTTGGAGGTTGGCGGCTTGATGCTGGTTGTGGTACTGAGCGGTGGTGCAGTCGCTACCCGGACTTGGCTGAGAATGATGGCGGTGAGGTTGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTGGGCTACTATACTGTAAGCACCTCAATTGTGAGCATTGGCGAGCAGCATAGCTGGTTTTTAATGGATGAGGATAATCTACATCACTTTGTAGTTGTTTTGTTTTCTTATTTCCAAAAAGTGAGCTTCAACTTTGTAATCGAACAACCATTCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

24.27

Weight (kDa)

9.45

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	390
AciI	CCGC	3 cut(s)	363, 390, 431
AclWI	GGATC	3 cut(s)	187, 260, 273
AcsI	RAATTY	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	279
AfaI	GTAC	1 cut(s)	384
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	129, 414
AgsI	TTSAA	2 cut(s)	466, 607
AloI	GAACNNNNNNTCC	1 cut(s)	612
AluBI	AGCT	2 cut(s)	531, 603
AluI	AGCT	2 cut(s)	531, 603
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	3 cut(s)	187, 260, 273
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	4 cut(s)	135, 142, 219, 523
ApoI	RAATTY	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	32, 44, 88
AspS9I	GGNCC	1 cut(s)	199
AsuC2I	CCSGG	4 cut(s)	197, 270, 328, 409
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	275
BamHI	GGATCC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	129, 147, 206, 535
BccI	CCATC	4 cut(s)	170, 310, 421, 436
BceAI	ACGGC	2 cut(s)	55, 272
BcnI	CCSGG	4 cut(s)	197, 270, 328, 409
BcoDI	GTCTC	1 cut(s)	2
BfoI	RGCGCY	3 cut(s)	33, 45, 89
BglI	GCCNNNNNGGC	1 cut(s)	67
BglII	AGATCT	1 cut(s)	304
BisI	GCNGC	5 cut(s)	136, 143, 220, 364, 524
BlsI	GCNGC	5 cut(s)	137, 144, 221, 365, 525
Bme1390I	CCNGG	4 cut(s)	197, 270, 328, 409
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	200, 267
BmrFI	CCNGG	4 cut(s)	197, 270, 328, 409
BmsI	GCATC	2 cut(s)	281, 360
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
Bpu10I	CCTNAGC	1 cut(s)	223
BpuEI	CTTGAG	2 cut(s)	74, 85
BpuMI	CCSGG	4 cut(s)	197, 270, 328, 409
BsaJI	CCNNGG	2 cut(s)	53, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 414
Bse118I	RCCGGY	2 cut(s)	32, 228
Bse1I	ACTGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	53, 351
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	129, 414
BseMII	CTCAG	2 cut(s)	377, 410
BseNI	ACTGG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	129, 147, 206, 535
BsgI	GTGCAG	2 cut(s)	154, 417
BshFI	GGCC	1 cut(s)	228
BsiSI	CCGG	6 cut(s)	33, 196, 229, 269, 327, 409
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	129, 414
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp143I	GATC	4 cut(s)	179, 214, 265, 304
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	3 cut(s)	363, 390, 431
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	378, 411
BspLI	GGNNCC	2 cut(s)	200, 267
BspPI	GGATC	3 cut(s)	187, 260, 273
BsrBI	CCGCTC	1 cut(s)	390
BsrFI	RCCGGY	2 cut(s)	32, 228
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	2 cut(s)	32, 228
BssECI	CCNNGG	2 cut(s)	53, 351
BssMI	GATC	4 cut(s)	179, 214, 265, 304
BssT1I	CCWWGG	2 cut(s)	53, 351
Bst4CI	ACNGT	2 cut(s)	118, 493
BstC8I	GCNNGC	4 cut(s)	34, 140, 230, 521
BstDEI	CTNAG	4 cut(s)	26, 223, 386, 419
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	550
BstH2I	RGCGCY	3 cut(s)	33, 45, 89
BstHHI	GCGC	3 cut(s)	32, 44, 88
BstKTI	GATC	4 cut(s)	182, 217, 268, 307
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	179, 214, 265, 304
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 58, 67, 225
BstSCI	CCNGG	4 cut(s)	195, 268, 326, 407
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	4 cut(s)	129, 147, 206, 535
BstX2I	RGATCY	3 cut(s)	179, 265, 304
BstYI	RGATCY	3 cut(s)	179, 265, 304
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	34, 140, 230, 521
CfoI	GCGC	3 cut(s)	32, 44, 88
Cfr10I	RCCGGY	2 cut(s)	32, 228
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	2 cut(s)	54, 243
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	4 cut(s)	26, 223, 386, 419
DpnI	GATC	4 cut(s)	181, 216, 267, 306
DpnII	GATC	4 cut(s)	179, 214, 265, 304
DraIII	CACNNNGTG	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	53, 351
Eco47I	GGWCC	1 cut(s)	199
Eco47III	AGCGCT	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	53, 351
ErhI	CCWWGG	2 cut(s)	53, 351
FaeI	CATG	2 cut(s)	57, 246
FaiI	YATR	6 cut(s)	23, 55, 244, 278, 489, 528
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	53, 242
Fnu4HI	GCNGC	5 cut(s)	136, 143, 220, 364, 524
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	5 cut(s)	136, 143, 220, 364, 524
GlaI	GCGC	3 cut(s)	31, 43, 87
GluI	GCNGC	5 cut(s)	136, 143, 220, 364, 524
HaeII	RGCGCY	3 cut(s)	33, 45, 89
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	6 cut(s)	33, 196, 229, 269, 327, 409
HhaI	GCGC	3 cut(s)	32, 44, 88
Hin1II	CATG	2 cut(s)	57, 246
Hin6I	GCGC	3 cut(s)	30, 42, 86
HinP1I	GCGC	3 cut(s)	30, 42, 86
HinfI	GANTC	4 cut(s)	110, 234, 247, 470
HpaII	CCGG	6 cut(s)	33, 196, 229, 269, 327, 409
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	3 cut(s)	170, 252, 309
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	1 cut(s)	114
HpyCH4III	ACNGT	2 cut(s)	118, 493
HpyCH4V	TGCA	2 cut(s)	135, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 58, 67, 225
HpyF3I	CTNAG	4 cut(s)	26, 223, 386, 419
Hsp92II	CATG	2 cut(s)	57, 246
HspAI	GCGC	3 cut(s)	30, 42, 86
KroI	GCCGGC	2 cut(s)	32, 228
KroNI	GCCGGC	2 cut(s)	34, 230
Kzo9I	GATC	4 cut(s)	179, 214, 265, 304
Lsp1109I	GCAGC	4 cut(s)	129, 147, 206, 535
LweI	GCATC	2 cut(s)	281, 360
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	181, 216, 267, 306
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	4 cut(s)	179, 214, 265, 304
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	3 cut(s)	179, 265, 304
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	3 cut(s)	207, 450, 504
MlyI	GAGTC	2 cut(s)	119, 479
MnlI	CCTC	9 cut(s)	60, 133, 157, 165, 349, 355, 429, 511, 541
MroNI	GCCGGC	2 cut(s)	32, 228
MseI	TTAA	1 cut(s)	539
MslI	CAYNNNNRTG	2 cut(s)	52, 631
MspI	CCGG	6 cut(s)	33, 196, 229, 269, 327, 409
MspR9I	CCNGG	4 cut(s)	197, 270, 328, 409
MunI	CAATTG	1 cut(s)	504
MwoI	GCNNNNNNNGC	4 cut(s)	27, 58, 67, 225
NaeI	GCCGGC	2 cut(s)	34, 230
NciI	CCSGG	4 cut(s)	197, 270, 328, 409
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	4 cut(s)	179, 214, 265, 304
NgoMIV	GCCGGC	2 cut(s)	32, 228
NlaIII	CATG	2 cut(s)	57, 246
NlaIV	GGNNCC	2 cut(s)	200, 267
NmuCI	GTSAC	1 cut(s)	118
PdiI	GCCGGC	2 cut(s)	34, 230
PfeI	GAWTC	2 cut(s)	234, 247
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	5 cut(s)	137, 144, 221, 365, 525
PleI	GAGTC	2 cut(s)	118, 478
PpsI	GAGTC	2 cut(s)	118, 478
PspN4I	GGNNCC	2 cut(s)	200, 267
PspPI	GGNCC	1 cut(s)	199
PsuI	RGATCY	3 cut(s)	179, 265, 304
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	2 cut(s)	52, 631
SaqAI	TTAA	1 cut(s)	539
SatI	GCNGC	5 cut(s)	136, 143, 220, 364, 524
Sau3AI	GATC	4 cut(s)	179, 214, 265, 304
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	2 cut(s)	119, 479
ScrFI	CCNGG	4 cut(s)	197, 270, 328, 409
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	8 cut(s)	125, 134, 353, 360, 440, 503, 533, 605
SfaNI	GCATC	2 cut(s)	281, 360
SinI	GGWCC	1 cut(s)	199
SmiMI	CAYNNNNRTG	2 cut(s)	52, 631
SmlI	CTYRAG	2 cut(s)	64, 89
SmoI	CTYRAG	2 cut(s)	64, 89
Sse9I	AATT	3 cut(s)	207, 450, 504
SsiI	CCGC	3 cut(s)	363, 390, 431
StyD4I	CCNGG	4 cut(s)	195, 268, 326, 407
StyI	CCWWGG	2 cut(s)	53, 351
TaaI	ACNGT	2 cut(s)	118, 493
TaqI	TCGA	4 cut(s)	125, 289, 347, 618
TasI	AATT	3 cut(s)	207, 450, 504
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	2 cut(s)	234, 247
Tru1I	TTAA	1 cut(s)	539
Tru9I	TTAA	1 cut(s)	539
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	4 cut(s)	135, 142, 219, 523
Tsp45I	GTSAC	1 cut(s)	118
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.