Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

18173615 .. 18174704

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCGTGAGACCCCTTCTCGCATACTTAGCGCCGGCAACGGCGCTTCACAACCATGGAAGCCCTTGAGGCTTTCTCAACATCAAGCGCTCGAGCATTTGTTTCCAGTGGAGTCCACCGTGACCTCAACAAGGCCAGCGAATCTGCTCATGGATTCCGATACGGCTTTGGGATCCGGGCACTATGTGGTGGTTTCGATGCTTCTTTGTAGATCTAACATTGATGGTGCTGGCTGGGATATTCTGGTTTTCCTCGACCTTGGAGGTTGGCGGTGTGATGCTGGTTGTGGTAGTGCGCGGTGGTGCAGTCGCTGCCCGGACTTGGCTAAGAAGGATGGCGATAAGCCAAGTTTTCCATTAGTTTTTAGTTTACTTTTCTTTCCCTGCAGATTGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTGGGTAACTATACTGTAAGCACCTCAATTGCGAGCATTGGCGAGCAGCATACCCGGTTTTTAATGGATGAGGATAATCTACATCACTTTGTAGTTGTTTTGTTTTCTTATTTCCAGAAAGTGAGCTTCAACTTTGTAATCGAACAACCATTCCAACGAAATATGGTATGTTCTGCCTTAGATTTTCAATATAACCTTAGTAGGTCAATTTATGCTCATGTGAATGTTCAGGATGCCCCTATAAACGATTGTAACTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.87

Weight (kDa)

6.14

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	295
AciI	CCGC	2 cut(s)	268, 295
AclWI	GGATC	2 cut(s)	165, 178
AcsI	RAATTY	1 cut(s)	399
AdeI	CACNNNGTG	1 cut(s)	184
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	129, 319
AgsI	TTSAA	3 cut(s)	415, 556, 614
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
AluBI	AGCT	1 cut(s)	552
AluI	AGCT	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	165, 178
AlwNI	CAGNNNCTG	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	89
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	309, 472
ApoI	RAATTY	1 cut(s)	399
AspLEI	GCGC	4 cut(s)	32, 44, 88, 295
AsuC2I	CCSGG	3 cut(s)	175, 314, 481
AvaI	CYCGRG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	296, 484
BccI	CCATC	3 cut(s)	215, 326, 385
BceAI	ACGGC	2 cut(s)	55, 177
BcnI	CCSGG	3 cut(s)	175, 314, 481
BcoDI	GTCTC	1 cut(s)	2
BfmI	CTRYAG	1 cut(s)	382
BfoI	RGCGCY	3 cut(s)	33, 45, 89
BglI	GCCNNNNNGGC	1 cut(s)	67
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	2 cut(s)	310, 473
BlsI	GCNGC	2 cut(s)	311, 474
Bme1390I	CCNGG	3 cut(s)	175, 314, 481
BmeT110I	CYCGRG	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	3 cut(s)	175, 314, 481
BmsI	GCATC	3 cut(s)	186, 265, 649
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	3 cut(s)	175, 314, 481
BsaI	GGTCTC	1 cut(s)	2
BsaJI	CCNNGG	2 cut(s)	53, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 319
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	53, 256
BseGI	GGATG	3 cut(s)	337, 499, 664
BseLI	CCNNNNNNNGG	2 cut(s)	129, 319
BseNI	ACTGG	1 cut(s)	104
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	296, 484
BseYI	CCCAGC	1 cut(s)	231
BsgI	GTGCAG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	4 cut(s)	33, 174, 314, 481
BslI	CCNNNNNNNGG	2 cut(s)	129, 319
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	133
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	170, 209
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	2 cut(s)	268, 295
BspANI	GGCC	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	386
BspPI	GGATC	2 cut(s)	165, 178
BspTNI	GGTCTC	1 cut(s)	2
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	53, 256
BssMI	GATC	2 cut(s)	170, 209
BssT1I	CCWWGG	2 cut(s)	53, 256
Bst4CI	ACNGT	2 cut(s)	118, 442
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	5 cut(s)	34, 135, 229, 460, 470
BstDEI	CTNAG	4 cut(s)	26, 324, 604, 623
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	3 cut(s)	337, 499, 664
BstFNI	CGCG	1 cut(s)	295
BstH2I	RGCGCY	3 cut(s)	33, 45, 89
BstHHI	GCGC	4 cut(s)	32, 44, 88, 295
BstKTI	GATC	2 cut(s)	173, 212
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	2 cut(s)	170, 209
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 67, 309
BstSCI	CCNGG	3 cut(s)	173, 312, 479
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	296, 484
BstX2I	RGATCY	2 cut(s)	170, 209
BstYI	RGATCY	2 cut(s)	170, 209
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	337, 499, 664
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	5 cut(s)	34, 135, 229, 460, 470
CaiI	CAGNNNCTG	1 cut(s)	309
CfoI	GCGC	4 cut(s)	32, 44, 88, 295
Cfr10I	RCCGGY	1 cut(s)	32
CviAII	CATG	3 cut(s)	54, 148, 644
CviJI	RGCY	8 cut(s)	61, 70, 133, 164, 231, 323, 343, 552
CviKI_1	RGCY	8 cut(s)	61, 70, 133, 164, 231, 323, 343, 552
DdeI	CTNAG	4 cut(s)	26, 324, 604, 623
DpnI	GATC	2 cut(s)	172, 211
DpnII	GATC	2 cut(s)	170, 209
DraIII	CACNNNGTG	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	53, 256
Eco31I	GGTCTC	1 cut(s)	2
Eco47III	AGCGCT	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	53, 256
ErhI	CCWWGG	2 cut(s)	53, 256
FaeI	CATG	3 cut(s)	57, 151, 647
FatI	CATG	3 cut(s)	53, 147, 643
Fnu4HI	GCNGC	2 cut(s)	310, 473
FokI	GGATG	3 cut(s)	344, 506, 671
Fsp4HI	GCNGC	2 cut(s)	310, 473
GlaI	GCGC	4 cut(s)	31, 43, 87, 294
GluI	GCNGC	2 cut(s)	310, 473
GsaI	CCCAGC	1 cut(s)	235
HaeII	RGCGCY	3 cut(s)	33, 45, 89
HaeIII	GGCC	1 cut(s)	133
HapII	CCGG	4 cut(s)	33, 174, 314, 481
HhaI	GCGC	4 cut(s)	32, 44, 88, 295
Hin1II	CATG	3 cut(s)	57, 151, 647
Hin6I	GCGC	4 cut(s)	30, 42, 86, 293
HinP1I	GCGC	4 cut(s)	30, 42, 86, 293
HinfI	GANTC	4 cut(s)	110, 139, 152, 419
HpaII	CCGG	4 cut(s)	33, 174, 314, 481
Hpy166II	GTNNAC	2 cut(s)	114, 368
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	541, 656
Hpy8I	GTNNAC	2 cut(s)	114, 368
HpyAV	CCTTC	2 cut(s)	24, 322
HpyCH4III	ACNGT	2 cut(s)	118, 442
HpyCH4V	TGCA	2 cut(s)	303, 384
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 67, 309
HpyF3I	CTNAG	4 cut(s)	26, 324, 604, 623
Hsp92II	CATG	3 cut(s)	57, 151, 647
HspAI	GCGC	4 cut(s)	30, 42, 86, 293
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	170, 209
Lsp1109I	GCAGC	2 cut(s)	296, 484
LweI	GCATC	3 cut(s)	186, 265, 649
MaeIII	GTNAC	3 cut(s)	118, 431, 677
MalI	GATC	2 cut(s)	172, 211
MboI	GATC	2 cut(s)	170, 209
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	2 cut(s)	170, 209
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	399, 453, 633
MlyI	GAGTC	2 cut(s)	119, 428
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	6 cut(s)	60, 133, 254, 260, 460, 490
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	2 cut(s)	52, 648
MspI	CCGG	4 cut(s)	33, 174, 314, 481
MspR9I	CCNGG	3 cut(s)	175, 314, 481
MunI	CAATTG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	3 cut(s)	27, 67, 309
NaeI	GCCGGC	1 cut(s)	34
NciI	CCSGG	3 cut(s)	175, 314, 481
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	170, 209
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	3 cut(s)	57, 151, 647
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	139, 152
PkrI	GCNGC	2 cut(s)	311, 474
PleI	GAGTC	2 cut(s)	118, 427
PpsI	GAGTC	2 cut(s)	118, 427
PspFI	CCCAGC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	172
PspXI	VCTCGAGB	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	386
PstNI	CAGNNNCTG	1 cut(s)	309
PsuI	RGATCY	2 cut(s)	170, 209
RseI	CAYNNNNRTG	2 cut(s)	52, 648
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	2 cut(s)	310, 473
Sau3AI	GATC	2 cut(s)	170, 209
SchI	GAGTC	2 cut(s)	119, 428
ScrFI	CCNGG	3 cut(s)	175, 314, 481
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	7 cut(s)	125, 258, 265, 452, 554, 624, 632
SfaNI	GCATC	3 cut(s)	186, 265, 649
SfcI	CTRYAG	1 cut(s)	382
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	52, 648
SmlI	CTYRAG	2 cut(s)	64, 89
SmoI	CTYRAG	2 cut(s)	64, 89
Sse9I	AATT	3 cut(s)	399, 453, 633
SsiI	CCGC	2 cut(s)	268, 295
StyD4I	CCNGG	3 cut(s)	173, 312, 479
StyI	CCWWGG	2 cut(s)	53, 256
TaaI	ACNGT	2 cut(s)	118, 442
TaqI	TCGA	4 cut(s)	90, 194, 252, 567
TasI	AATT	3 cut(s)	399, 453, 633
TfiI	GAWTC	2 cut(s)	139, 152
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	309, 472
Tsp45I	GTSAC	1 cut(s)	118
TspRI	CASTG	1 cut(s)	111
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	1 cut(s)	399
XhoI	CTCGAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.