Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Forward (+)

31958674 .. 31959288

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0182700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGAAATAGTGCCACGGCTAGTAATAGTGACCCTTCCCATGTAGTAGAATTACCAGGACTGCCACTAGCGCTGAAGAGCCGCAACCTGCCCTCCTTCATGGTGGATTCGAATCCGTACAATTTCGCTCTCCCATTGATCGAAGAACAGTTTGAGCTGCTACGAAAAGAAAGCAAGCCAACCATCTTGGTGAACACGTTCGATGCACTTGAGCCGGAGGCGTTAAAAGCAATTGACAAGTTCAACTTGATCGGAATCGAGCCATTAATGCCATCTGCTTTCTTGGACGGCAAGGATCCATCCGATAAATCATTCGGTGATCTATTCGAGAATTCAAAGACCTCAGCGTACCTAGAATGGTTGAACTCGAAGCCGAAAGAATCTGTCATCTACGTTTCGTTTGGGAGCATTTCTGTGTTGTCCAAGATTCAAATGGAGGAAATTGCAAAAGTGTTGTTGAATTCTGGTAGTCCGTTTCTGTGGGTGATTAGAGAAAACCAAAAGAACGGAGAAGGTAAGGAAGAGAAAGAAGAAGACAAACTGAGTTGTAGAGAGGAACTAGAAGAGCTTGTGATGATAGTCCCGTGGTGTAGTCAAGTGGAGGTTGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

204

Amino Acids

22.89

Weight (kDa)

4.66

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	290, 303
AcsI	RAATTY	2 cut(s)	331, 460
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	119, 350
AfeI	AGCGCT	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	244, 336, 364, 431, 460
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	2 cut(s)	157, 568
AluI	AGCT	2 cut(s)	157, 568
AlwI	GGATC	2 cut(s)	290, 303
Aor51HI	AGCGCT	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	331, 460
AseI	ATTAAT	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	202, 329, 496
AsuII	TTCGAA	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	540
BbvCI	CCTCAGC	1 cut(s)	343
BbvI	GCAGC	1 cut(s)	144
BccI	CCATC	3 cut(s)	191, 280, 307
BceAI	ACGGC	2 cut(s)	33, 304
BciT130I	CCWGG	1 cut(s)	57
BfaI	CTAG	4 cut(s)	21, 68, 353, 560
BfoI	RGCGCY	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	82, 158
BlsI	GCNGC	2 cut(s)	83, 159
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	343
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	2 cut(s)	111, 254
BsaJI	CCNNGG	2 cut(s)	15, 584
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bse8I	GATNNNNATC	2 cut(s)	111, 254
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	15, 584
BseGI	GGATG	1 cut(s)	299
BseJI	GATNNNNATC	2 cut(s)	111, 254
BseMII	CTCAG	2 cut(s)	357, 533
BseXI	GCAGC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	110
Bsp143I	GATC	4 cut(s)	138, 249, 295, 319
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	356, 534
BspLI	GGNNCC	1 cut(s)	297
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	290, 303
BspQI	GCTCTTC	2 cut(s)	71, 558
BspT104I	TTCGAA	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	15, 584
BssMI	GATC	4 cut(s)	138, 249, 295, 319
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	3 cut(s)	71, 516, 558
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	343, 542
BstDSI	CCRYGG	2 cut(s)	15, 584
BstF5I	GGATG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	73
BstKTI	GATC	4 cut(s)	141, 252, 298, 322
BstMBI	GATC	4 cut(s)	138, 249, 295, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 227, 268
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	144
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtgI	CCRYGG	2 cut(s)	15, 584
BtsCI	GGATG	1 cut(s)	299
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	118, 349
CviAII	CATG	2 cut(s)	41, 100
CviJI	RGCY	8 cut(s)	20, 81, 157, 178, 214, 262, 373, 568
CviKI_1	RGCY	8 cut(s)	20, 81, 157, 178, 214, 262, 373, 568
CviQI	GTAC	2 cut(s)	118, 349
DdeI	CTNAG	2 cut(s)	343, 542
DpnI	GATC	4 cut(s)	140, 251, 297, 321
DpnII	GATC	4 cut(s)	138, 249, 295, 319
Eam1104I	CTCTTC	3 cut(s)	71, 516, 558
EarI	CTCTTC	3 cut(s)	71, 516, 558
Eco47III	AGCGCT	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	95
EcoRI	GAATTC	2 cut(s)	331, 460
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	2 cut(s)	44, 103
FaiI	YATR	2 cut(s)	42, 101
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	2 cut(s)	40, 99
Fnu4HI	GCNGC	2 cut(s)	82, 158
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	82, 158
FspBI	CTAG	4 cut(s)	21, 68, 353, 560
GlaI	GCGC	1 cut(s)	72
GluI	GCNGC	2 cut(s)	82, 158
HaeII	RGCGCY	1 cut(s)	74
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	1 cut(s)	73
Hin1II	CATG	2 cut(s)	44, 103
Hin6I	GCGC	1 cut(s)	71
HinP1I	GCGC	1 cut(s)	71
HinfI	GANTC	5 cut(s)	107, 112, 255, 380, 427
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	202, 329, 496
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	254, 304
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	45, 106, 506
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	2 cut(s)	197, 393
HpyCH4V	TGCA	2 cut(s)	206, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 227, 268
HpyF3I	CTNAG	2 cut(s)	343, 542
HpySE526I	ACGT	2 cut(s)	197, 393
Hsp92II	CATG	2 cut(s)	44, 103
HspAI	GCGC	1 cut(s)	71
Kzo9I	GATC	4 cut(s)	138, 249, 295, 319
LguI	GCTCTTC	2 cut(s)	71, 558
LmnI	GCTCC	1 cut(s)	405
LpnPI	CCDG	5 cut(s)	42, 69, 101, 228, 450
Lsp1109I	GCAGC	1 cut(s)	144
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	4 cut(s)	21, 68, 353, 560
MaeII	ACGT	2 cut(s)	197, 393
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	4 cut(s)	140, 251, 297, 321
MboI	GATC	4 cut(s)	138, 249, 295, 319
MboII	GAAGA	6 cut(s)	88, 155, 533, 542, 545, 575
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	6 cut(s)	50, 121, 231, 331, 441, 460
MnlI	CCTC	6 cut(s)	103, 211, 352, 430, 547, 595
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	2 cut(s)	224, 266
MslI	CAYNNNNRTG	2 cut(s)	188, 413
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	70, 227, 268
NdeII	GATC	4 cut(s)	138, 249, 295, 319
NlaIII	CATG	2 cut(s)	44, 103
NlaIV	GGNNCC	1 cut(s)	297
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	110
PciSI	GCTCTTC	2 cut(s)	71, 558
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	5 cut(s)	107, 112, 255, 380, 427
PkrI	GCNGC	2 cut(s)	83, 159
PshBI	ATTAAT	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	297
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	119, 350
RsaNI	GTAC	2 cut(s)	118, 349
RseI	CAYNNNNRTG	2 cut(s)	188, 413
SapI	GCTCTTC	2 cut(s)	71, 558
SaqAI	TTAA	2 cut(s)	224, 266
SatI	GCNGC	2 cut(s)	82, 158
Sau3AI	GATC	4 cut(s)	138, 249, 295, 319
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	9 cut(s)	90, 159, 200, 344, 354, 396, 517, 570, 606
SfaNI	GCATC	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	188, 413
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	6 cut(s)	50, 121, 231, 331, 441, 460
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	4 cut(s)	21, 68, 353, 560
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	2 cut(s)	200, 396
TaqI	TCGA	6 cut(s)	110, 141, 201, 258, 327, 368
TasI	AATT	6 cut(s)	50, 121, 231, 331, 441, 460
TauI	GCSGC	1 cut(s)	84
TfiI	GAWTC	5 cut(s)	107, 112, 255, 380, 427
Tru1I	TTAA	2 cut(s)	224, 266
Tru9I	TTAA	2 cut(s)	224, 266
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	1 cut(s)	88
TspGWI	ACGGA	3 cut(s)	105, 462, 522
VspI	ATTAAT	1 cut(s)	266
XapI	RAATTY	2 cut(s)	331, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	4 cut(s)	21, 68, 353, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.