Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

2357620 .. 2358745

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G031600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCCAAGTTTCCTGTGAACCCCTTTCTCCTGCTCAGTAGGCGATCATATAAGGTTGCAAGATCAGTGCAAAAGGCAGCGACGACAATGAGGAGGACTGCCACAACTGAATCGGGCAGTAGTGTTAATGATAATGTAGCAAATAATCATGATAGTCCGCAGATGAATCAAGTGTTTTGGATGAGAGACCCGAAGACAGGGAACTGGATTCCAGAGAGCCACTTTGAGGACGTTGATGTTGCAGAGCTGAGGGAGAAGCTCCTCCCCAACCTCAACAACAAGCACAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

98

Amino Acids

11.12

Weight (kDa)

9.77

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	158
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	2 cut(s)	197, 226
AluBI	AGCT	2 cut(s)	247, 259
AluI	AGCT	2 cut(s)	247, 259
Alw26I	GTCTC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	77
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	180
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 226
Bse1I	ACTGG	1 cut(s)	209
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	197, 226
BseMII	CTCAG	2 cut(s)	49, 239
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	106, 251
BseXI	GCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	197, 226
BsmAI	GTCTC	1 cut(s)	180
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	44, 62
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	48, 240
BspHI	TCATGA	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	209
BssMI	GATC	2 cut(s)	44, 62
BstDEI	CTNAG	2 cut(s)	35, 248
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	2 cut(s)	47, 65
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	2 cut(s)	44, 62
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	148
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	4 cut(s)	5, 219, 247, 259
CviKI_1	RGCY	4 cut(s)	5, 219, 247, 259
DdeI	CTNAG	2 cut(s)	35, 248
DpnI	GATC	2 cut(s)	46, 64
DpnII	GATC	2 cut(s)	44, 62
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	180
FaeI	CATG	1 cut(s)	152
FaiI	YATR	3 cut(s)	49, 51, 150
FatI	CATG	1 cut(s)	148
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	152
HinfI	GANTC	3 cut(s)	110, 166, 208
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	149, 212
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	59, 70, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	35, 248
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	152
Kzo9I	GATC	2 cut(s)	44, 62
LmnI	GCTCC	1 cut(s)	264
LpnPI	CCDG	5 cut(s)	27, 44, 183, 190, 225
Lsp1109I	GCAGC	1 cut(s)	89
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	46, 64
MboI	GATC	2 cut(s)	44, 62
MboII	GAAGA	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	84, 87, 220, 243, 272, 281
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	126, 292
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	2 cut(s)	44, 62
NlaIII	CATG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	110, 166, 208
PkrI	GCNGC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	126, 292
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	44, 62
SetI	ASST	5 cut(s)	57, 234, 249, 261, 273
SsiI	CCGC	1 cut(s)	158
TaiI	ACGT	1 cut(s)	234
TfiI	GAWTC	3 cut(s)	110, 166, 208
Tru1I	TTAA	2 cut(s)	126, 292
Tru9I	TTAA	2 cut(s)	126, 292
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	179
TspRI	CASTG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.