Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Forward (+)

15515599 .. 15519893

Gene Structure 4295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017341

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATTCTGATACGGCTTTGGGATCCAGGCACTATGTGGTGGTTTCGATGCTTCTTTGTAGATCTGACATTGATGGTGCTGACCGGGATATTCTAGTTTTCCTCGACCTTGGAGGTTGGTGGAGTGCTACTGGTTGTGGTAGTGATCGGTGGTGCAGTCGCTGCCCGGACTTGGCTGAGAAGGATGGCGGTGAGGTGGAGAGATTGATGGAGAAAATTCTCAATGACTTCAAGGAGTCTTACTTGGGCTACTATACTCTTCCCTCAGATCCAGGCCTCGTCTCAAATTCAAATTCAAATTCAAATTCAAAGCCCAAGTCTCAGAAAGCAGCTCTCTGGCAAAGTAGAAGTTCTGCGAGGCACAAGCATCAATCAAAGACGGAAAGCAATTACTTTTTTGATTCGACAAACCAGGCTTTTCGTTTCATTTTTTACCATTCAAGGTCCCATATCCAGTGCCATTCAGACTTCTTGGTCACATTTCAGCTTGATAAAATCAACACCCACATGATTGGTACAGTAATTGATTTCCCAGCCAGGTTTCACATTTACATGTTTCAATGGAACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.86

Weight (kDa)

6.43

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	3 cut(s)	18, 31, 263
AcsI	RAATTY	5 cut(s)	216, 286, 292, 298, 304
AdeI	CACNNNGTG	1 cut(s)	37
AfaI	GTAC	1 cut(s)	517
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	552
AgsI	TTSAA	7 cut(s)	232, 291, 297, 303, 309, 441, 560
AjnI	CCWGG	4 cut(s)	26, 271, 411, 536
AluBI	AGCT	2 cut(s)	332, 487
AluI	AGCT	2 cut(s)	332, 487
Alw26I	GTCTC	2 cut(s)	286, 324
AlwI	GGATC	3 cut(s)	18, 31, 263
AlwNI	CAGNNNCTG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	162, 329
ApoI	RAATTY	5 cut(s)	216, 286, 292, 298, 304
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspS9I	GGNCC	1 cut(s)	444
AsuC2I	CCSGG	2 cut(s)	86, 167
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	444
BamHI	GGATCC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	149, 341
BccI	CCATC	3 cut(s)	68, 179, 202
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	4 cut(s)	28, 273, 413, 538
BcnI	CCSGG	2 cut(s)	86, 167
BcoDI	GTCTC	2 cut(s)	286, 324
BfaI	CTAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	2 cut(s)	163, 330
BlsI	GCNGC	2 cut(s)	164, 331
Bme1390I	CCNGG	6 cut(s)	28, 86, 167, 273, 413, 538
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	25, 446
BmrFI	CCNGG	6 cut(s)	28, 86, 167, 273, 413, 538
BmsI	GCATC	2 cut(s)	39, 376
BpuMI	CCSGG	2 cut(s)	86, 167
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	136, 454
BseBI	CCWGG	4 cut(s)	28, 273, 413, 538
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	168, 279, 335
BseNI	ACTGG	2 cut(s)	136, 454
BseXI	GCAGC	2 cut(s)	149, 341
BseYI	CCCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	85, 167
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	286, 324
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	23, 62, 145, 268
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	169, 278, 334
BspLI	GGNNCC	2 cut(s)	25, 446
BspPI	GGATC	3 cut(s)	18, 31, 263
BsrI	ACTGG	2 cut(s)	136, 454
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	23, 62, 145, 268
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	4 cut(s)	28, 273, 413, 538
Bst4CI	ACNGT	1 cut(s)	520
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	177, 265, 321
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	4 cut(s)	26, 65, 148, 271
BstMAI	GTCTC	2 cut(s)	286, 324
BstMBI	GATC	4 cut(s)	23, 62, 145, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	162
BstNI	CCWGG	4 cut(s)	28, 273, 413, 538
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	6 cut(s)	26, 84, 165, 271, 411, 536
BstV1I	GCAGC	2 cut(s)	149, 341
BstX2I	RGATCY	3 cut(s)	23, 62, 268
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	3 cut(s)	23, 62, 268
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	2 cut(s)	508, 553
CviJI	RGCY	9 cut(s)	17, 176, 249, 276, 313, 332, 416, 487, 536
CviKI_1	RGCY	9 cut(s)	17, 176, 249, 276, 313, 332, 416, 487, 536
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	3 cut(s)	177, 265, 321
DpnI	GATC	4 cut(s)	25, 64, 147, 270
DpnII	GATC	4 cut(s)	23, 62, 145, 268
DraIII	CACNNNGTG	1 cut(s)	37
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	4 cut(s)	26, 271, 411, 536
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	511, 556
FaiI	YATR	5 cut(s)	36, 255, 450, 509, 554
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	2 cut(s)	507, 552
Fnu4HI	GCNGC	2 cut(s)	163, 330
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	163, 330
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	2 cut(s)	163, 330
GsaI	CCCAGC	1 cut(s)	536
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	2 cut(s)	85, 167
Hin1II	CATG	2 cut(s)	511, 556
HinfI	GANTC	3 cut(s)	5, 236, 401
HpaII	CCGG	2 cut(s)	85, 167
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	5 cut(s)	10, 67, 268, 324, 466
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	162
HpyF3I	CTNAG	3 cut(s)	177, 265, 321
Hsp92II	CATG	2 cut(s)	511, 556
Kzo9I	GATC	4 cut(s)	23, 62, 145, 268
Lsp1109I	GCAGC	2 cut(s)	149, 341
LweI	GCATC	2 cut(s)	39, 376
MaeI	CTAG	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	4 cut(s)	25, 64, 147, 270
MboI	GATC	4 cut(s)	23, 62, 145, 268
MboII	GAAGA	1 cut(s)	251
MflI	RGATCY	3 cut(s)	23, 62, 268
MluCI	AATT	7 cut(s)	216, 286, 292, 298, 304, 388, 522
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	6 cut(s)	107, 113, 187, 274, 287, 351
MslI	CAYNNNNRTG	2 cut(s)	506, 551
MspI	CCGG	2 cut(s)	85, 167
MspR9I	CCNGG	6 cut(s)	28, 86, 167, 273, 413, 538
MvaI	CCWGG	4 cut(s)	28, 273, 413, 538
MwoI	GCNNNNNNNGC	1 cut(s)	162
NciI	CCSGG	2 cut(s)	86, 167
NdeII	GATC	4 cut(s)	23, 62, 145, 268
NlaIII	CATG	2 cut(s)	511, 556
NlaIV	GGNNCC	2 cut(s)	25, 446
NmuCI	GTSAC	1 cut(s)	475
NspI	RCATGY	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	276
PciI	ACATGT	1 cut(s)	552
PfeI	GAWTC	2 cut(s)	5, 401
PkrI	GCNGC	2 cut(s)	164, 331
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	444
PscI	ACATGT	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	4 cut(s)	26, 271, 411, 536
PspFI	CCCAGC	1 cut(s)	532
PspGI	CCWGG	4 cut(s)	26, 271, 411, 536
PspN4I	GGNNCC	2 cut(s)	25, 446
PspPI	GGNCC	1 cut(s)	444
PspPPI	RGGWCCY	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	162
PsuI	RGATCY	3 cut(s)	23, 62, 268
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	506, 551
SatI	GCNGC	2 cut(s)	163, 330
Sau3AI	GATC	4 cut(s)	23, 62, 145, 268
Sau96I	GGNCC	1 cut(s)	444
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	6 cut(s)	28, 86, 167, 273, 413, 538
SetI	ASST	7 cut(s)	111, 118, 198, 334, 446, 489, 542
SfaNI	GCATC	2 cut(s)	39, 376
SinI	GGWCC	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	506, 551
Sse9I	AATT	7 cut(s)	216, 286, 292, 298, 304, 388, 522
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	95
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	6 cut(s)	26, 84, 165, 271, 411, 536
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	47, 105, 404
TasI	AATT	7 cut(s)	216, 286, 292, 298, 304, 388, 522
TfiI	GAWTC	2 cut(s)	5, 401
TscAI	CASTG	1 cut(s)	461
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	162, 329
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	1 cut(s)	415
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	461
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	5 cut(s)	216, 286, 292, 298, 304
XceI	RCATGY	1 cut(s)	556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.