Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002435

Physical Location & Seq

Genomic Coordinates Reverse (-)

19202486 .. 19203246

Gene Structure 761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAGCCCTTGAGGCTTTCTCAACATCGAGCGCTCAAGCGTTTGTTCTAGTGGAGTCCAGCGTGACCTCGACAAGGTGCAGCACTCTGCCCTTAACCTCTCAATCCCAAATCCGATCAGATGGATCTGCTTCTCTTCTCCGGGACCAAGGGATTGGTGATGGCTTCTTAGGCCCGCGAATCTGCTCATGGATTCCGATACGGCTTTGGGATCCGGGCACTATGTGGTGGTTTCGATGCTTCTTTGTAGATCTGACATTGATGGTGTTGACCGGGATATTCTGGTTTTCCTCGACCTTGGAGGTTGGCGGCGTGATGCTGGTTGTGGTAGTGCACGGTGGTGCAGTCACTGCCCGGACTTGGCTGAAAAGGATGGCGATTGATGGAGAAAATTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.6

Weight (kDa)

5.21

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15910
fragaria_vesca	FvH4_4g18470 FvH4_6g35740
malus_domestica	MD00G1127700.v1.1 MD09G1173500.v1.1
prunus_persica	Prupe.1G133500_v2.0.a1 Prupe.3G031600_v2.0.a1 Prupe.3G031600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0147741 RchiOBHm_Chr4g0422961
rosa_laevigata	RLG00000001608 RLG00000001693 RLG00000014632 RLG00000017341 RLG00000019023 RLG00000019868 RLG00000020134 RLG00000020275 RLG00000026239 RLG00000028168 RLG00000033054
rosa_multiflora	Rmu_sc0000308.1_g000026 Rmu_sc0000744.1_g000160 Rmu_sc0000830.1_g000013
rosa_roxburghii	Rroxscaffold_2G00099360 Rroxscaffold_5G00365080
rosa_rugosa	Rorug02G0401600 Rorug04G0182700 Rorug04G0182800 Rorug04G0182900
rosa_samantha	Rh2AG458700 Rh2BG471800 Rh2CG446000 Rh2DG480700 Rh4AG242900 Rh4BG247400 Rh4CG256800 Rh4DG242200
rosa_wichuraiana	Rw2G037490 Rw3G005390 Rw4G020920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	178
AciI	CCGC	2 cut(s)	176, 309
AclWI	GGATC	3 cut(s)	133, 206, 219
AcsI	RAATTY	1 cut(s)	391
AdeI	CACNNNGTG	1 cut(s)	225
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	75, 360
AleI	CACNNNNGTG	1 cut(s)	339
Alw21I	GWGCWC	1 cut(s)	336
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	3 cut(s)	133, 206, 219
AlwNI	CAGNNNCTG	1 cut(s)	350
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	145, 173
AsuC2I	CCSGG	4 cut(s)	143, 216, 274, 355
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	2 cut(s)	221, 336
BamHI	GGATCC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	5 cut(s)	116, 155, 256, 367, 377
BceAI	ACGGC	1 cut(s)	218
BcnI	CCSGG	4 cut(s)	143, 216, 274, 355
BfaI	CTAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	14
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	2 cut(s)	82, 310
BlsI	GCNGC	2 cut(s)	83, 311
Bme1390I	CCNGG	4 cut(s)	143, 216, 274, 355
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	145, 173
BmiI	GGNNCC	2 cut(s)	146, 213
BmrFI	CCNGG	4 cut(s)	143, 216, 274, 355
BmsI	GCATC	2 cut(s)	227, 306
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuEI	CTTGAG	2 cut(s)	21, 32
BpuMI	CCSGG	4 cut(s)	143, 216, 274, 355
BsaJI	CCNNGG	2 cut(s)	148, 297
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 360
BseDI	CCNNGG	2 cut(s)	148, 297
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	75, 360
BseSI	GKGCMC	2 cut(s)	221, 336
BseXI	GCAGC	1 cut(s)	93
BsgI	GTGCAG	2 cut(s)	100, 363
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	4 cut(s)	142, 215, 273, 355
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	2 cut(s)	75, 360
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	221, 336
Bsp143I	GATC	4 cut(s)	116, 125, 211, 250
BspACI	CCGC	2 cut(s)	176, 309
BspANI	GGCC	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	146, 213
BspPI	GGATC	3 cut(s)	133, 206, 219
BssECI	CCNNGG	2 cut(s)	148, 297
BssMI	GATC	4 cut(s)	116, 125, 211, 250
BssT1I	CCWWGG	2 cut(s)	148, 297
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	169
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	4 cut(s)	119, 128, 214, 253
BstMBI	GATC	4 cut(s)	116, 125, 211, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 171, 350
BstSCI	CCNGG	4 cut(s)	141, 214, 272, 353
BstSLI	GKGCMC	2 cut(s)	221, 336
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	93
BstX2I	RGATCY	3 cut(s)	125, 211, 250
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	3 cut(s)	125, 211, 250
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	378
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	145, 173
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	6 cut(s)	8, 17, 165, 174, 205, 364
CviKI_1	RGCY	6 cut(s)	8, 17, 165, 174, 205, 364
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	4 cut(s)	118, 127, 213, 252
DpnII	GATC	4 cut(s)	116, 125, 211, 250
DraIII	CACNNNGTG	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	2 cut(s)	148, 297
Eco47I	GGWCC	1 cut(s)	145
Eco47III	AGCGCT	1 cut(s)	34
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	148, 297
ErhI	CCWWGG	2 cut(s)	148, 297
FaeI	CATG	1 cut(s)	192
FaiI	YATR	2 cut(s)	190, 224
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	188
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	82, 310
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	2 cut(s)	82, 310
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	82, 310
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	4 cut(s)	142, 215, 273, 355
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	56, 180, 193
HpaII	CCGG	4 cut(s)	142, 215, 273, 355
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	270, 334
Hpy188I	TCNGA	4 cut(s)	116, 121, 198, 255
Hpy8I	GTNNAC	2 cut(s)	270, 334
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	3 cut(s)	81, 334, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 171, 350
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	192
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	116, 125, 211, 250
LpnPI	CCDG	7 cut(s)	73, 155, 228, 268, 286, 305, 368
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	2 cut(s)	227, 306
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	2 cut(s)	64, 346
MalI	GATC	4 cut(s)	118, 127, 213, 252
MboI	GATC	4 cut(s)	116, 125, 211, 250
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	3 cut(s)	125, 211, 250
MhlI	GDGCHC	2 cut(s)	221, 336
MluCI	AATT	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	7, 79, 109, 295, 301
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	4 cut(s)	142, 215, 273, 355
MspR9I	CCNGG	4 cut(s)	143, 216, 274, 355
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	14, 171, 350
NciI	CCSGG	4 cut(s)	143, 216, 274, 355
NdeII	GATC	4 cut(s)	116, 125, 211, 250
NlaIII	CATG	1 cut(s)	192
NlaIV	GGNNCC	2 cut(s)	146, 213
NmuCI	GTSAC	2 cut(s)	64, 346
OliI	CACNNNNGTG	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	180, 193
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	83, 311
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	146, 213
PspPI	GGNCC	2 cut(s)	145, 173
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	3 cut(s)	125, 211, 250
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	82, 310
Sau3AI	GATC	4 cut(s)	116, 125, 211, 250
Sau96I	GGNCC	2 cut(s)	145, 173
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	4 cut(s)	143, 216, 274, 355
SduI	GDGCHC	2 cut(s)	221, 336
SetI	ASST	5 cut(s)	71, 80, 101, 299, 306
SfaNI	GCATC	2 cut(s)	227, 306
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	11, 36
SmoI	CTYRAG	2 cut(s)	11, 36
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	2 cut(s)	176, 309
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	4 cut(s)	141, 214, 272, 353
StyI	CCWWGG	2 cut(s)	148, 297
TaaI	ACNGT	1 cut(s)	338
TaqI	TCGA	4 cut(s)	29, 71, 235, 293
TasI	AATT	1 cut(s)	391
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	180, 193
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	2 cut(s)	64, 346
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	2 cut(s)	64, 346
TspRI	CASTG	1 cut(s)	355
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	391
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.