FvH4_6g35740

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002435
Physical Location & Seq
Forward (+)
28196683 .. 28196979
297 bp
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UTR
Exon/CDS
Intron
FvH4_6g35740.t1

Sequence Viewer

Length: 297 bp
ATGGCCAAGGTTCCCATGAACTCGTTTCTCCTTCTCAGCAAGAGATGGTATAACGTAGCTGCAGAGAGTACTAGTACTGCTAAAGTACTAGCGCAGCCAGCAGTGTCGACAATAAGGAGGATGGCCACAACAGAAACCTCCGGTAGCAGCGGTAGAGCCCTCGCAGATAATCAGGAGAAGAAGCAAGTGTTTTGGATGAGAGACCCAAAGACGGGGAACTGGATTCCGGAGAATCACTTTGAAGATATTGATGCTGCAGAGCTGAGGGAGAAGCTCCTCAACAAGCACAGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

9.69

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 12 - 96 1.4e-17 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 107
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 150
AcoI YGGCCR 2 cut(s) 3, 123
AfaI GTAC 3 cut(s) 70, 76, 87
AfiI CCNNNNNNNGG 2 cut(s) 211, 212
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 71
AluBI AGCT 3 cut(s) 59, 262, 274
AluI AGCT 3 cut(s) 59, 262, 274
Alw26I GTCTC 1 cut(s) 195
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 3, 123
ApeKI GCWGC 4 cut(s) 59, 94, 147, 254
AspLEI GCGC 1 cut(s) 94
BalI TGGCCA 2 cut(s) 5, 125
BanII GRGCYC 1 cut(s) 160
BbvCI CCTCAGC 1 cut(s) 263
BbvI GCAGC 4 cut(s) 46, 106, 159, 241
BccI CCATC 2 cut(s) 39, 115
BcoDI GTCTC 1 cut(s) 195
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 89
BfmI CTRYAG 2 cut(s) 60, 255
BisI GCNGC 4 cut(s) 60, 95, 148, 255
BlsI GCNGC 4 cut(s) 61, 96, 149, 256
BmcAI AGTACT 3 cut(s) 70, 76, 87
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 263
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 6
BsaWI WCCGGW 2 cut(s) 140, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 212
Bse1I ACTGG 1 cut(s) 224
BseAI TCCGGA 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 2 cut(s) 126, 201
BseLI CCNNNNNNNGG 2 cut(s) 211, 212
BseMII CTCAG 2 cut(s) 49, 254
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 266
BseXI GCAGC 4 cut(s) 46, 106, 159, 241
BshFI GGCC 2 cut(s) 5, 125
BsiSI CCGG 2 cut(s) 141, 227
BslI CCNNNNNNNGG 2 cut(s) 211, 212
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 2 cut(s) 5, 125
Bso31I GGTCTC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 160
Bsp13I TCCGGA 1 cut(s) 226
BspACI CCGC 1 cut(s) 150
BspANI GGCC 2 cut(s) 5, 125
BspCNI CTCAG 2 cut(s) 48, 255
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 12
BspMAI CTGCAG 2 cut(s) 64, 259
BspTNI GGTCTC 1 cut(s) 195
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 2 cut(s) 35, 263
BstF5I GGATG 2 cut(s) 126, 201
BstHHI GCGC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstSFI CTRYAG 2 cut(s) 60, 255
BstV1I GCAGC 4 cut(s) 46, 106, 159, 241
BsuRI GGCC 2 cut(s) 5, 125
BtsCI GGATG 2 cut(s) 126, 201
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 94
Csp6I GTAC 3 cut(s) 69, 75, 86
CviAII CATG 1 cut(s) 16
CviJI RGCY 7 cut(s) 5, 59, 97, 125, 158, 262, 274
CviKI_1 RGCY 7 cut(s) 5, 59, 97, 125, 158, 262, 274
CviQI GTAC 3 cut(s) 69, 75, 86
DdeI CTNAG 2 cut(s) 35, 263
EaeI YGGCCR 2 cut(s) 3, 123
Eco130I CCWWGG 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 19
FaiI YATR 2 cut(s) 17, 51
FatI CATG 1 cut(s) 15
FblI GTMKAC 1 cut(s) 107
Fnu4HI GCNGC 4 cut(s) 60, 95, 148, 255
FokI GGATG 2 cut(s) 133, 208
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 60, 95, 148, 255
FspBI CTAG 2 cut(s) 72, 89
GlaI GCGC 1 cut(s) 93
GluI GCNGC 4 cut(s) 60, 95, 148, 255
HaeIII GGCC 2 cut(s) 5, 125
HapII CCGG 2 cut(s) 141, 227
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 2 cut(s) 223, 232
HpaII CCGG 2 cut(s) 141, 227
Hpy166II GTNNAC 1 cut(s) 108
Hpy188III TCNNGA 2 cut(s) 173, 227
Hpy8I GTNNAC 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 2 cut(s) 62, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 35, 263
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 92
Kpn2I TCCGGA 1 cut(s) 226
LmnI GCTCC 1 cut(s) 279
LpnPI CCDG 6 cut(s) 111, 154, 158, 205, 240, 274
Lsp1109I GCAGC 4 cut(s) 46, 106, 159, 241
LweI GCATC 1 cut(s) 241
MaeI CTAG 2 cut(s) 72, 89
MaeII ACGT 1 cut(s) 54
MboII GAAGA 2 cut(s) 190, 254
MhlI GDGCHC 1 cut(s) 160
MlsI TGGCCA 2 cut(s) 5, 125
MluNI TGGCCA 2 cut(s) 5, 125
MnlI CCTC 5 cut(s) 111, 148, 170, 258, 287
Mox20I TGGCCA 2 cut(s) 5, 125
MroI TCCGGA 1 cut(s) 226
MscI TGGCCA 2 cut(s) 5, 125
Msp20I TGGCCA 2 cut(s) 5, 125
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 2 cut(s) 141, 227
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 223, 232
PkrI GCNGC 4 cut(s) 61, 96, 149, 256
PspN4I GGNNCC 1 cut(s) 12
PstI CTGCAG 2 cut(s) 64, 259
RsaI GTAC 3 cut(s) 70, 76, 87
RsaNI GTAC 3 cut(s) 69, 75, 86
SalI GTCGAC 1 cut(s) 106
SatI GCNGC 4 cut(s) 60, 95, 148, 255
ScaI AGTACT 3 cut(s) 70, 76, 87
SduI GDGCHC 1 cut(s) 160
SetI ASST 6 cut(s) 12, 57, 61, 140, 264, 276
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 2 cut(s) 60, 255
SpeI ACTAGT 1 cut(s) 71
SsiI CCGC 1 cut(s) 150
SspMI CTAG 2 cut(s) 72, 89
StyI CCWWGG 1 cut(s) 6
TaiI ACGT 1 cut(s) 57
TaqI TCGA 1 cut(s) 107
TatI WGTACW 3 cut(s) 68, 74, 85
TfiI GAWTC 2 cut(s) 223, 232
TscAI CASTG 1 cut(s) 108
TseI GCWGC 4 cut(s) 59, 94, 147, 254
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 107
XspI CTAG 2 cut(s) 72, 89
ZrmI AGTACT 3 cut(s) 70, 76, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.