Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Reverse (-)

9159105 .. 9161614

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16162.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTAATAAATTTATTGAACATATCTCCAAGGGTATCTTTTGACATATCTCCAAGGGTCTCTTCCCAAAGAGCTTGTAGGGCTTCCATTTCTGCAAGAGATAAATCTCGCCACTTGAGTGGTTCTATTCCTTCAGAATGGGGACTCCTGCCACTTGTAAACATCACGCTTCTTGGAAACCGGTTAACTGGTCCTATCCCCAAGGAGATTGGAAACATTATCACGCTCGAAAGACTTGTCTTGGAAAATAACCAGCTTTCTGGAACACTGCCCCCAGAGCTTGGGAGACTCTCGAACCTTAAACGACTGGTTCTCTATGCAAGTGGGTTATCTGGACCTATACCTTTGTCAATCGCTCATCTCACAAAGCTGAAAGATTTAATGATAAGCGATATGACTGGACCTGAATTTTTCTTTCCACCACTACAGAGCATGACACAGATGAGGCAATTGGTTTTGAGAAATATAAATCTGAAAGGAGAGCTCCCATCATACCTTGGAACAAATACCACCAACTTAACACTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

176

Amino Acids

19.36

Weight (kDa)

10.19

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	64 - 151	8.5e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	281
AcsI	RAATTY	2 cut(s)	10, 407
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AleI	CACNNNNGTG	1 cut(s)	117
AluBI	AGCT	5 cut(s)	74, 256, 280, 370, 484
AluI	AGCT	5 cut(s)	74, 256, 280, 370, 484
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	64, 280
ApoI	RAATTY	2 cut(s)	10, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AsiGI	ACCGGT	1 cut(s)	180
AspS9I	GGNCC	3 cut(s)	191, 335, 401
AvaII	GGWCC	3 cut(s)	191, 335, 401
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BccI	CCATC	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	64, 280
BfmI	CTRYAG	1 cut(s)	425
Bme18I	GGWCC	3 cut(s)	191, 335, 401
BmgT120I	GGNCC	3 cut(s)	191, 335, 401
BpuEI	CTTGAG	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	4 cut(s)	29, 53, 201, 496
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	180
Bse1I	ACTGG	3 cut(s)	193, 312, 403
BseDI	CCNNGG	4 cut(s)	29, 53, 201, 496
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	193, 312, 403
BshTI	ACCGGT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	64, 280
BsmFI	GGGAC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	180
BsrI	ACTGG	3 cut(s)	193, 312, 403
BssAI	RCCGGY	1 cut(s)	180
BssECI	CCNNGG	4 cut(s)	29, 53, 201, 496
BssT1I	CCWWGG	4 cut(s)	29, 53, 201, 496
Bst6I	CTCTTC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	64, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 277
BstSFI	CTRYAG	1 cut(s)	425
BstXI	CCANNNNNNTGG	2 cut(s)	119, 260
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	180
Cfr13I	GGNCC	3 cut(s)	191, 335, 401
CspAI	ACCGGT	1 cut(s)	180
CviAII	CATG	1 cut(s)	433
CviJI	RGCY	6 cut(s)	74, 83, 256, 280, 370, 484
CviKI_1	RGCY	6 cut(s)	74, 83, 256, 280, 370, 484
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	4 cut(s)	29, 53, 201, 496
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	3 cut(s)	191, 335, 401
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	484
EcoT14I	CCWWGG	4 cut(s)	29, 53, 201, 496
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	4 cut(s)	29, 53, 201, 496
FaeI	CATG	1 cut(s)	436
FaiI	YATR	8 cut(s)	23, 47, 318, 341, 395, 434, 467, 493
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 46, 78
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	1 cut(s)	432
FriOI	GRGCYC	1 cut(s)	486
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	436
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	144, 288
HpaI	GTTAAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	160, 186
Hpy188I	TCNGA	2 cut(s)	136, 474
Hpy188III	TCNNGA	3 cut(s)	261, 292, 333
Hpy8I	GTNNAC	2 cut(s)	160, 186
HpyAV	CCTTC	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	95, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 277
Hsp92II	CATG	1 cut(s)	436
KspAI	GTTAAC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	489
MboII	GAAGA	1 cut(s)	54
MfeI	CAATTG	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	3 cut(s)	10, 407, 449
MlyI	GAGTC	2 cut(s)	138, 282
MnlI	CCTC	1 cut(s)	438
MseI	TTAA	5 cut(s)	5, 185, 300, 380, 518
MslI	CAYNNNNRTG	1 cut(s)	117
MspI	CCGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	80, 277
NlaIII	CATG	1 cut(s)	436
OliI	CACNNNNGTG	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	281
PinAI	ACCGGT	1 cut(s)	180
PleI	GAGTC	2 cut(s)	138, 282
PpsI	GAGTC	2 cut(s)	138, 282
Psp124BI	GAGCTC	1 cut(s)	486
PspPI	GGNCC	3 cut(s)	191, 335, 401
RseI	CAYNNNNRTG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	5 cut(s)	5, 185, 300, 380, 518
Sau96I	GGNCC	3 cut(s)	191, 335, 401
SchI	GAGTC	2 cut(s)	138, 282
SduI	GDGCHC	1 cut(s)	486
SfcI	CTRYAG	1 cut(s)	425
SinI	GGWCC	3 cut(s)	191, 335, 401
SmiMI	CAYNNNNRTG	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	10, 407, 449
SstI	GAGCTC	1 cut(s)	486
StyI	CCWWGG	4 cut(s)	29, 53, 201, 496
TaqI	TCGA	2 cut(s)	228, 293
TasI	AATT	3 cut(s)	10, 407, 449
Tru1I	TTAA	5 cut(s)	5, 185, 300, 380, 518
Tru9I	TTAA	5 cut(s)	5, 185, 300, 380, 518
TscAI	CASTG	1 cut(s)	273
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	191, 335, 401
XapI	RAATTY	2 cut(s)	10, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.