Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8379828 .. 8382760

Gene Structure 2933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTTGGTCTAACAGAGAAGCCGCCAGAGGAATCTGAGAGCACAACTGAATGTGAATGCCACTTCGAGAACAACACAGTTTGTCATGTCGTCAGATTAGTGCTCAAGCGTCATAGTTTACCTGGTTTGCTTACACCTGAACTAGTCAAGCTCCCTTACCTCCGAGAAATTGATTTTGCTTACAACTATCTCAATGGATTGGGAAATATAACTACTCTCAAGTACCTGTCCCTTGAAGCAAACCAGTTTTTTGGCATTCTTCCTGCTGAGCTTGGTTACCTGATCAATCTGCAGACTTTGGTGCTTTCCTCTAATGCGCCGACTGGAAAGCTGCCAAAGACATTTGCTCGGCTAACAAATTTGACAGATATACGTTTAAATGATAACAACCTCAATGGAACAATCCCCGATTGGGGGCAGAACTGGAAACAACTCAATAGATTGAGGATTAGTGACATGGATGGGCCTAGTCAGGAATTTCCTTTGCTGATAAACATGACAGGAATAGTAAGATTCCTTCTAACCGGAAATCTGCTTAGTGGAAACCTGCCAGATTCACTCTTGCAAGATGGAAAGAAAAATCTGCAATGTTTTCTTTTCACCTTTATTTGGTTCTTTTGTTTTTTTGATGTGTCATACAACAACTTCACATCGCAAGCTAGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

222

Amino Acids

25.22

Weight (kDa)

5.63

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	46 - 159	1.1e-11	Leucine-rich repeat region
LRR_8	PF13855	72 - 131	7.1e-07	Leucine rich repeat
LRR_8	PF13855	96 - 151	1.1e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	555
AciI	CCGC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	358, 476
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 609
AgsI	TTSAA	1 cut(s)	236
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	4 cut(s)	151, 271, 331, 659
AluI	AGCT	4 cut(s)	151, 271, 331, 659
Alw21I	GWGCWC	2 cut(s)	44, 105
AoxI	GGCC	2 cut(s)	464, 662
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	358, 476
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	464, 663
AsuHPI	GGTGA	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
Bbv12I	GWGCWC	2 cut(s)	44, 105
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	455, 563
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	282
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	3 cut(s)	143, 468, 660
BfmI	CTRYAG	1 cut(s)	290
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	23, 332
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	2 cut(s)	24, 333
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	464, 663
BmrFI	CCNGG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	89, 203
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 609
Bse1I	ACTGG	3 cut(s)	244, 328, 428
Bse3DI	GCAATG	1 cut(s)	593
BseBI	CCWGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 609
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	2 cut(s)	27, 258
BseNI	ACTGG	3 cut(s)	244, 328, 428
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	2 cut(s)	466, 664
BsiHKAI	GWGCWC	2 cut(s)	44, 105
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 609
BsmFI	GGGAC	1 cut(s)	214
BsmI	GAATGC	2 cut(s)	62, 255
BsnI	GGCC	2 cut(s)	466, 664
Bsp1286I	GDGCHC	2 cut(s)	44, 105
Bsp143I	GATC	1 cut(s)	282
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	2 cut(s)	466, 664
BspCNI	CTCAG	2 cut(s)	28, 259
BspMAI	CTGCAG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	555
BsrDI	GCAATG	1 cut(s)	593
BsrI	ACTGG	3 cut(s)	244, 328, 428
BssMI	GATC	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	3 cut(s)	36, 267, 536
BstEII	GGTNACC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	466
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	661
BstNI	CCWGG	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	318
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	466, 664
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	464, 663
CseI	GACGC	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	86, 457, 496
CviJI	RGCY	8 cut(s)	22, 151, 271, 331, 352, 466, 659, 664
CviKI_1	RGCY	8 cut(s)	22, 151, 271, 331, 352, 466, 659, 664
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	3 cut(s)	36, 267, 536
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	663
EcoO65I	GGTNACC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	89, 460, 499
FaiI	YATR	7 cut(s)	87, 114, 209, 371, 458, 497, 637
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	3 cut(s)	85, 456, 495
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	23, 332
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	23, 332
FspBI	CTAG	3 cut(s)	143, 468, 660
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	2 cut(s)	23, 332
HaeIII	GGCC	2 cut(s)	466, 664
HapII	CCGG	1 cut(s)	525
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	3 cut(s)	89, 460, 499
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	32, 513, 554
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	37, 95, 164
Hpy188III	TCNNGA	2 cut(s)	67, 473
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	3 cut(s)	292, 565, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	661
HpyF3I	CTNAG	3 cut(s)	36, 267, 536
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	3 cut(s)	89, 460, 499
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	318
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	3 cut(s)	143, 468, 660
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	2 cut(s)	275, 452
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	251
MhlI	GDGCHC	2 cut(s)	44, 105
MluCI	AATT	3 cut(s)	168, 358, 476
MnlI	CCTC	5 cut(s)	22, 170, 319, 401, 438
MseI	TTAA	1 cut(s)	377
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	62, 255
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	661
NdeII	GATC	1 cut(s)	282
NlaIII	CATG	3 cut(s)	89, 460, 499
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	452
PctI	GAATGC	2 cut(s)	62, 255
PfeI	GAWTC	3 cut(s)	32, 513, 554
PkrI	GCNGC	2 cut(s)	24, 333
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	121
PspPI	GGNCC	2 cut(s)	464, 663
PstI	CTGCAG	1 cut(s)	294
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	2 cut(s)	23, 332
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	2 cut(s)	464, 663
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	44, 105
SexAI	ACCWGGT	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	290
SmlI	CTYRAG	2 cut(s)	104, 218
SmoI	CTYRAG	2 cut(s)	104, 218
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	3 cut(s)	168, 358, 476
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	143, 468, 660
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	79
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	168, 358, 476
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	32, 513, 554
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	358, 476
XspI	CTAG	3 cut(s)	143, 468, 660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.