Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8216497 .. 8219729

Gene Structure 3233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG102600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGGCTGTTAACCACGTTCTTTGCTTCATTATTGCATTGATCTGCTTCAAGCTACTGGGACTTGCTGAATCTAAGGTGCCTCAAGAGGAAGTTGATGCTCTTCAAGAAATTATGACCAAAATGGGGGCAGTGTATTGGAAGTTTAATGATGATACTTGCTGGATTGAAGTGGTTGGTCTAACAGAGTCACCACCAAAGGGATCTGAGCGCAGAATTGATTGTGAATGCCACTTCAAGAACAACACTGAATGTCATGTCATAAGATTATCTGTTTTTGTTAATCATCTATCCGGGGAAATTCCGAAGGAGTTGGGAAATATGAGAACTCTCACATACTTGAGGATTAGTGACATGGATGGGCCAAATCAGGAATTTCCTTTGCTGAGAAATATGACTGGAGTAGTAAGATTTGATGTGTCGTACAATAACTTCACACTGCAAGGCCCTGAGAGCCCTCCTTGTCAAGAACATAAGTCAGAATACAATCTCATATTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

167

Amino Acids

19.08

Weight (kDa)

5.2

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	300, 374
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	126, 200
AgsI	TTSAA	4 cut(s)	52, 107, 170, 238
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	362, 445
ApoI	RAATTY	2 cut(s)	300, 374
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	362, 446
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	458
BarI	GAAGNNNNNNTAC	2 cut(s)	416, 448
BccI	CCATC	1 cut(s)	353
BcnI	CCSGG	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	295
BmgT120I	GGNCC	2 cut(s)	362, 446
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	295
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	69, 361
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 200
Bse1I	ACTGG	2 cut(s)	63, 403
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	2 cut(s)	126, 200
BseMII	CTCAG	3 cut(s)	198, 377, 441
BseNI	ACTGG	2 cut(s)	63, 403
BshFI	GGCC	2 cut(s)	364, 447
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	126, 200
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	364, 447
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	42, 203
BspANI	GGCC	2 cut(s)	364, 447
BspCNI	CTCAG	3 cut(s)	199, 378, 442
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	63, 403
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	2 cut(s)	42, 203
Bst6I	CTCTTC	1 cut(s)	108
BstDEI	CTNAG	4 cut(s)	75, 207, 386, 450
BstF5I	GGATG	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	45, 206
BstMBI	GATC	2 cut(s)	42, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	364, 447
BtsCI	GGATG	1 cut(s)	364
BtsI	GCAGTG	2 cut(s)	138, 437
BtsIMutI	CAGTG	3 cut(s)	138, 246, 437
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	362, 446
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	2 cut(s)	257, 355
CviJI	RGCY	5 cut(s)	8, 55, 364, 447, 456
CviKI_1	RGCY	5 cut(s)	8, 55, 364, 447, 456
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	4 cut(s)	75, 207, 386, 450
DpnI	GATC	2 cut(s)	44, 205
DpnII	GATC	2 cut(s)	42, 203
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	458
FaeI	CATG	2 cut(s)	260, 358
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	2 cut(s)	256, 354
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	458
GlaI	GCGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	2 cut(s)	364, 447
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	2 cut(s)	260, 358
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	71, 188
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	208, 306, 481
Hpy188III	TCNNGA	5 cut(s)	86, 107, 238, 371, 467
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	38, 442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	4 cut(s)	75, 207, 386, 450
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	260, 358
HspAI	GCGC	1 cut(s)	211
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	42, 203
LguI	GCTCTTC	1 cut(s)	108
LpnPI	CCDG	6 cut(s)	44, 148, 307, 356, 384, 462
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	189, 350
MalI	GATC	2 cut(s)	44, 205
MboI	GATC	2 cut(s)	42, 203
MboII	GAAGA	1 cut(s)	95
MflI	RGATCY	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	4 cut(s)	111, 216, 300, 374
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	82, 93, 336, 468
MseI	TTAA	3 cut(s)	12, 147, 282
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	295
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	2 cut(s)	42, 203
NlaIII	CATG	2 cut(s)	260, 358
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	189, 350
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	362, 446
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	12, 147, 282
Sau3AI	GATC	2 cut(s)	42, 203
Sau96I	GGNCC	2 cut(s)	362, 446
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	458
SetI	ASST	3 cut(s)	21, 57, 81
SfaNI	GCATC	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	84, 340
SmoI	CTYRAG	2 cut(s)	84, 340
Sse9I	AATT	4 cut(s)	111, 216, 300, 374
StyD4I	CCNGG	1 cut(s)	293
TaiI	ACGT	1 cut(s)	21
TasI	AATT	4 cut(s)	111, 216, 300, 374
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	3 cut(s)	12, 147, 282
Tru9I	TTAA	3 cut(s)	12, 147, 282
TscAI	CASTG	3 cut(s)	138, 253, 444
TseFI	GTSAC	2 cut(s)	189, 350
Tsp45I	GTSAC	2 cut(s)	189, 350
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	3 cut(s)	138, 253, 444
XapI	RAATTY	2 cut(s)	300, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.