Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

44783612 .. 44784104

Gene Structure 493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCCCAGCCCTAATATCCAGGACAAACTGGTATCGAAGGATTTTGATATTACAAAGGAAGCATTAGGGGTTGATAAGGACGTGATCAAGGTATTTAAAGCAGTTTTTAATGTTAAGACTTTACTGATCCGCTTTCAGTGGGCTGGGAAAGGGACAACTAATGTTCCACTAGGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

59

Amino Acids

6.49

Weight (kDa)

9.52

Isoelectric Point (pI)

22.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	6 - 57	3.2e-06	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	173
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	18
AlwI	GGATC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	20
BclI	TGATCA	1 cut(s)	84
BfaI	CTAG	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	20
BmgBI	CACGTC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	33
BseYI	CCCAGC	2 cut(s)	5, 143
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	84, 126
BspACI	CCGC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	84, 126
Bst2UI	CCWGG	1 cut(s)	20
BstKTI	GATC	2 cut(s)	87, 129
BstMBI	GATC	2 cut(s)	84, 126
BstNI	CCWGG	1 cut(s)	20
BstSCI	CCNGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	143
CviJI	RGCY	2 cut(s)	9, 143
CviKI_1	RGCY	2 cut(s)	9, 143
DpnI	GATC	2 cut(s)	86, 128
DpnII	GATC	2 cut(s)	84, 126
DraI	TTTAAA	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	18
FaqI	GGGAC	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	84
FspBI	CTAG	1 cut(s)	170
GsaI	CCCAGC	2 cut(s)	9, 147
HpyAV	CCTTC	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	84, 126
LpnPI	CCDG	5 cut(s)	5, 14, 19, 32, 129
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	81
MalI	GATC	2 cut(s)	86, 128
MboI	GATC	2 cut(s)	84, 126
MnlI	CCTC	1 cut(s)	167
MseI	TTAA	3 cut(s)	96, 108, 114
MspR9I	CCNGG	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	20
NdeII	GATC	2 cut(s)	84, 126
PfoI	TCCNGGA	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	18
PspFI	CCCAGC	2 cut(s)	5, 143
PspGI	CCWGG	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	96, 108, 114
Sau3AI	GATC	2 cut(s)	84, 126
ScrFI	CCNGG	1 cut(s)	20
SetI	ASST	2 cut(s)	84, 93
SgeI	CNNG	7 cut(s)	18, 31, 32, 41, 94, 100, 156
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	1 cut(s)	18
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	96, 108, 114
Tru9I	TTAA	3 cut(s)	96, 108, 114
TscAI	CASTG	1 cut(s)	143
TspRI	CASTG	1 cut(s)	143
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.