Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

24854523 .. 24857407

Gene Structure 2885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1181300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTTTTCCATCGGATTTCCGTCGAATTGGACCAATTTAACATGCCCGAGCATCATCTCGCCATTCCCTCTTCCATTTTCATCCAAAATTTGAAGGAATTTGGGGGTAATTTCGTGAAGAACCAATGGTGGGTGTTCCGAAGCCACGGCGGCAATCCGCCCATTTCCGAAGGGATTTTCTTCAACCATCACCACCCTCAGGTGTCTTTGGAGTCCAGGAACAAAGCCCAATCGACATTGGAGGCGGCGGAATTGAGCTTGACTATCGTGCTGAAAATATGGAATTTATATGATGGATGGAATGAGAATTTTGAACAGTATGTTGGTTTGTTTTGTAGCCGGAACTTGGGTGTGACAGCTACAAAATCTCCAAGGTTTGTATTGAATGATAACGAACTGGGAGGACATATCCCGTATGAACTCTGTCAACTAAACAACCTAGCCAATTTATTTTTGGGCGGTAATAGTCTATCTGGTTCTATTCCTTCCTGCTTGGGTACTGTAGCAGTATCTTTAAGAAGTCTATCCTTAGTGTCCAATTTGGTAACTTCTAAAATACCATCTTCCTTGTGGGAACTCAAGTATGTATTAAACCTAAACTTGTCATCCAATTCTCTAGTTGGACCACTCTCAGAAGACAATGAAAGTTTGGGGTTGAAAAAGATAAAAGAAATATATTTTATCTGTGCTCCAATGAAAATACAAAAGGAAAAGGATTTAAAGGAAAGTTACACTTTAAATACTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

251

Amino Acids

28.04

Weight (kDa)

6.44

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	150, 158, 245, 248, 459
AcsI	RAATTY	4 cut(s)	88, 98, 283, 307
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	3 cut(s)	130, 199, 346
AgsI	TTSAA	6 cut(s)	94, 184, 314, 385, 658, 747
AjnI	CCWGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	2 cut(s)	258, 359
AluI	AGCT	2 cut(s)	258, 359
Alw21I	GWGCWC	1 cut(s)	691
Ama87I	CYCGRG	1 cut(s)	47
ApoI	RAATTY	4 cut(s)	88, 98, 283, 307
AspS9I	GGNCC	2 cut(s)	31, 623
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	31, 623
AxyI	CCTNAGG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	691
BccI	CCATC	5 cut(s)	18, 195, 287, 291, 568
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	217
BfaI	CTAG	2 cut(s)	440, 617
BfmI	CTRYAG	1 cut(s)	501
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	151, 246
BlsI	GCNGC	2 cut(s)	152, 247
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	31, 623
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	31, 623
BmrFI	CCNGG	1 cut(s)	217
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	145, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 199, 346
Bse1I	ACTGG	1 cut(s)	402
Bse21I	CCTNAGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	217
BseDI	CCNNGG	2 cut(s)	145, 371
BseGI	GGATG	3 cut(s)	81, 302, 605
BseLI	CCNNNNNNNGG	3 cut(s)	130, 199, 346
BseMII	CTCAG	2 cut(s)	212, 645
BseNI	ACTGG	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	691
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	3 cut(s)	130, 199, 346
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	691
BspACI	CCGC	5 cut(s)	150, 158, 245, 248, 459
BspCNI	CTCAG	2 cut(s)	211, 644
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	2 cut(s)	145, 371
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	318, 502
Bst6I	CTCTTC	1 cut(s)	76
BstDEI	CTNAG	3 cut(s)	198, 529, 631
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	3 cut(s)	81, 302, 605
BstMWI	GCNNNNNNNGC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	215
BstSFI	CTRYAG	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	642
Bsu36I	CCTNAGG	1 cut(s)	198
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	81, 302, 605
Cfr13I	GGNCC	2 cut(s)	31, 623
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	6 cut(s)	144, 227, 258, 339, 359, 443
CviKI_1	RGCY	6 cut(s)	144, 227, 258, 339, 359, 443
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	3 cut(s)	198, 529, 631
DraI	TTTAAA	2 cut(s)	720, 738
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
EciI	GGCGGA	2 cut(s)	147, 263
Eco130I	CCWWGG	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	31, 623
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	1 cut(s)	46
FaiI	YATR	9 cut(s)	44, 280, 289, 291, 321, 408, 417, 585, 676
FalI	AAGNNNNNCTT	2 cut(s)	718, 750
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	2 cut(s)	151, 246
FokI	GGATG	3 cut(s)	68, 309, 592
Fsp4HI	GCNGC	2 cut(s)	151, 246
FspBI	CTAG	2 cut(s)	440, 617
GluI	GCNGC	2 cut(s)	151, 246
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	1 cut(s)	46
HincII	GTYRAC	1 cut(s)	428
HindII	GTYRAC	1 cut(s)	428
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	4 cut(s)	15, 140, 169, 634
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	88, 164, 495
HpyCH4III	ACNGT	2 cut(s)	318, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	150
HpyF3I	CTNAG	3 cut(s)	198, 529, 631
Hsp92II	CATG	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	7 cut(s)	185, 202, 229, 353, 383, 459, 502
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	440, 617
MaeIII	GTNAC	3 cut(s)	352, 544, 728
MboII	GAAGA	5 cut(s)	63, 130, 172, 555, 647
MhlI	GDGCHC	1 cut(s)	691
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	4 cut(s)	79, 207, 235, 395
MseI	TTAA	5 cut(s)	39, 515, 590, 719, 737
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	352
NspI	RCATGY	1 cut(s)	46
PfoI	TCCNGGA	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	152, 247
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	31, 623
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SaqAI	TTAA	5 cut(s)	39, 515, 590, 719, 737
SatI	GCNGC	2 cut(s)	151, 246
Sau96I	GGNCC	2 cut(s)	31, 623
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	691
SetI	ASST	6 cut(s)	204, 260, 361, 377, 441, 597
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	2 cut(s)	31, 623
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
SsiI	CCGC	5 cut(s)	150, 158, 245, 248, 459
SspMI	CTAG	2 cut(s)	440, 617
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	2 cut(s)	318, 502
TaqI	TCGA	2 cut(s)	24, 233
TauI	GCSGC	2 cut(s)	153, 248
Tru1I	TTAA	5 cut(s)	39, 515, 590, 719, 737
Tru9I	TTAA	5 cut(s)	39, 515, 590, 719, 737
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	4 cut(s)	70, 432, 657, 710
TspGWI	ACGGA	1 cut(s)	10
VpaK11BI	GGWCC	2 cut(s)	31, 623
XapI	RAATTY	4 cut(s)	88, 98, 283, 307
XceI	RCATGY	1 cut(s)	46
XcmI	CCANNNNNNNNNTGG	2 cut(s)	451, 567
XspI	CTAG	2 cut(s)	440, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.