Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Reverse (-)

38978464 .. 38978877

Gene Structure 414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0325100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCTCATTGGTTTTCAGAAGTACTTTTGTTTTCCTGCCAATGATGTTTGTGTTGATGGTCCTAACCATGTCCGAAGCCAAAACACATGTTCGCATCACTAACGATTTACCAAACAACATGGACCTAACCGTTCATTGTAAATCCAGGGAAGACAACCTCGGCGCCCACGTACTCTCCTACCTCGACTCTTATGAATTTCGTTTCAATCCAAACATCGTGGGGTCAACTTTGTTTTACTGCTCTATGGCCTGGCCGTCACACACTCGCTATTTTAATATTTACAGTTTCAGAAGAGATGGCAGTTGTGAATGGAGCAAACATGTTTGTATGTGGAGGGTAACACCAGAAGGTCCTTGCATAGTGAAGAACTTGAGTAATAACCAGACCGTTTGTTATAATTGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

137

Amino Acids

16.07

Weight (kDa)

8.8

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	30 - 135	9.3e-28	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	25, 174
AflIII	ACRYGT	2 cut(s)	88, 322
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	146, 251
AoxI	GGCC	3 cut(s)	3, 249, 254
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	3 cut(s)	61, 124, 353
AvaII	GGWCC	3 cut(s)	61, 124, 353
BanI	GGYRCC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	159
BccI	CCATC	2 cut(s)	52, 293
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	2 cut(s)	148, 253
BfoI	RGCGCY	1 cut(s)	168
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	148, 253
Bme18I	GGWCC	3 cut(s)	61, 124, 353
BmgT120I	GGNCC	3 cut(s)	61, 124, 353
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	148, 253
BmsI	GCATC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	394
BsaAI	YACGTR	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	147, 160
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
BseBI	CCWGG	2 cut(s)	148, 253
BseDI	CCNNGG	2 cut(s)	147, 160
BshFI	GGCC	3 cut(s)	5, 251, 256
BshNI	GGYRCC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	5, 251, 256
BspANI	GGCC	3 cut(s)	5, 251, 256
BspLI	GGNNCC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	147, 160
BssNI	GRCGYC	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	148, 253
Bst4CI	ACNGT	3 cut(s)	133, 287, 391
Bst6I	CTCTTC	1 cut(s)	289
BstACI	GRCGYC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	148, 253
BstNSI	RCATGY	2 cut(s)	92, 326
BstSCI	CCNGG	2 cut(s)	146, 251
BstV2I	GAAGAC	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	5, 251, 256
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	3 cut(s)	61, 124, 353
Csp6I	GTAC	2 cut(s)	24, 173
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	4 cut(s)	70, 89, 121, 323
CviJI	RGCY	4 cut(s)	5, 80, 251, 256
CviKI_1	RGCY	4 cut(s)	5, 80, 251, 256
CviQI	GTAC	2 cut(s)	24, 173
DinI	GGCGCC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	61, 124, 353
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	146, 251
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaeI	CATG	4 cut(s)	73, 92, 124, 326
FaiI	YATR	9 cut(s)	71, 90, 122, 195, 248, 324, 332, 362, 399
FatI	CATG	4 cut(s)	69, 88, 120, 322
GlaI	GCGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	3 cut(s)	5, 251, 256
HhaI	GCGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	73, 92, 124, 326
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	3 cut(s)	20, 76, 293
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	3 cut(s)	133, 287, 391
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	4 cut(s)	73, 92, 124, 326
HspAI	GCGC	1 cut(s)	165
KasI	GGCGCC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	7 cut(s)	50, 133, 160, 238, 265, 360, 398
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	258, 340
MboII	GAAGA	3 cut(s)	164, 306, 379
MluCI	AATT	2 cut(s)	197, 400
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	4 cut(s)	16, 170, 194, 330
MseI	TTAA	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	148, 253
MvaI	CCWGG	2 cut(s)	148, 253
NarI	GGCGCC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	73, 92, 124, 326
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	258
NspI	RCATGY	2 cut(s)	92, 326
PciI	ACATGT	2 cut(s)	88, 322
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	353
PscI	ACATGT	2 cut(s)	88, 322
PsiI	TTATAA	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	146, 251
PspGI	CCWGG	2 cut(s)	146, 251
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	61, 124, 353
PspPPI	RGGWCCY	1 cut(s)	353
RsaI	GTAC	2 cut(s)	25, 174
RsaNI	GTAC	2 cut(s)	24, 173
SaqAI	TTAA	1 cut(s)	276
Sau96I	GGNCC	3 cut(s)	61, 124, 353
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	148, 253
SetI	ASST	5 cut(s)	129, 162, 174, 186, 355
SfaNI	GCATC	1 cut(s)	105
SfoI	GGCGCC	1 cut(s)	166
SinI	GGWCC	3 cut(s)	61, 124, 353
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	2 cut(s)	197, 400
SspDI	GGCGCC	1 cut(s)	164
SspI	AATATT	1 cut(s)	280
StyD4I	CCNGG	2 cut(s)	146, 251
TaaI	ACNGT	3 cut(s)	133, 287, 391
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	197, 400
TatI	WGTACW	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	125, 210
VpaK11BI	GGWCC	3 cut(s)	61, 124, 353
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	2 cut(s)	92, 326
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.