Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7860752 .. 7864341

Gene Structure 3590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG089200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGGCTGTTAACCACGTTCTTTGCTTCATTATTGCATTGATCTGCTTCAAGCTACTGGGACTTGCTGAATCTAAGGTGCCTCAAGAGGAAGTTGATGCTCTTAAAGAAATTATGACCAAAATGGGGGCAGTGTATTGGAAGTTTAATGATGATACTTGCTGGATTGAAGTGGTTGGTCTAACAGAGTCACCACCAAAGGGATCTGAGCGCAGAATTGATTGTGAATGCCACTTCAAGAACAACACTGAATGTCATGTCATAAGATTAATGATCAAAGGTTATAGTTTACCTGGTTTGCTTCCACCTGAATTAATCAAGCTGCCTTACCTCCAGGAAATGAGGATTAGTGACATGGATGGGCCAAATCAGGAATTTCCTTTGCTGAGAAATATGACTGGAGTAGTAAGATTGATTTTGAGGAACTGTAACATTTTCGGAGAGATCCCCACATATATCTGGTCCATGAAGAATCTGGAAATGTTGGATCTCAGTTTCAACAAGTTAGCAGGTGAACTTTCATCCACCGCAAACATTACTGAGCGCCTGAAATTTGTCTTTCTAACTGGAAACCTGCTAGGTGGAACTGTGCCGGATTCACTCTTGCGTGATGGAAATAGTGTTGATGTGTCGTACAATAACTTCACACTGCAAGGCCCTGAGAGCCCTCCTTGTCAAGAACATAAGAATCTAAGTCTAAACTTGTTTCGAAGCTCCTCAAAGGAGAATGACTTAAGGAGTGTTCTTCCATGCTCGAAGAATTTTCACTGCCCACGATGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

261

Amino Acids

29.53

Weight (kDa)

6.23

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	2 cut(s)	500, 582
AccB1I	GGYRCC	1 cut(s)	79
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	3 cut(s)	211, 439, 495
AcsI	RAATTY	3 cut(s)	374, 551, 760
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	2 cut(s)	126, 200
AflII	CTTAAG	1 cut(s)	733
AgsI	TTSAA	4 cut(s)	52, 170, 238, 499
AjnI	CCWGG	2 cut(s)	292, 333
AluBI	AGCT	3 cut(s)	55, 322, 714
AluI	AGCT	3 cut(s)	55, 322, 714
AlwI	GGATC	3 cut(s)	211, 439, 495
AoxI	GGCC	2 cut(s)	362, 655
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	374, 551, 760
AseI	ATTAAT	2 cut(s)	269, 314
AspLEI	GCGC	2 cut(s)	213, 546
AspS9I	GGNCC	3 cut(s)	362, 462, 656
AsuHPI	GGTGA	2 cut(s)	183, 524
AsuII	TTCGAA	1 cut(s)	709
AvaII	GGWCC	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	668
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	353, 605
BciT130I	CCWGG	2 cut(s)	294, 335
BclI	TGATCA	1 cut(s)	273
BfaI	CTAG	1 cut(s)	578
BfoI	RGCGCY	1 cut(s)	547
BfrI	CTTAAG	1 cut(s)	733
BfuAI	ACCTGC	2 cut(s)	500, 582
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	2 cut(s)	294, 335
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	3 cut(s)	362, 462, 656
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	2 cut(s)	294, 335
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	68
BpmI	CTGGAG	2 cut(s)	317, 420
Bpu14I	TTCGAA	1 cut(s)	709
BpuEI	CTTGAG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 200
Bse1I	ACTGG	3 cut(s)	63, 403, 571
BseBI	CCWGG	2 cut(s)	294, 335
BseGI	GGATG	2 cut(s)	364, 521
BseLI	CCNNNNNNNGG	2 cut(s)	126, 200
BseMII	CTCAG	5 cut(s)	198, 377, 505, 531, 651
BseNI	ACTGG	3 cut(s)	63, 403, 571
BseRI	GAGGAG	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	309
BshFI	GGCC	2 cut(s)	364, 657
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	593
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	126, 200
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	364, 657
Bsp119I	TTCGAA	1 cut(s)	709
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	5 cut(s)	42, 203, 273, 444, 487
BspACI	CCGC	1 cut(s)	528
BspANI	GGCC	2 cut(s)	364, 657
BspCNI	CTCAG	5 cut(s)	199, 378, 504, 532, 652
BspLI	GGNNCC	1 cut(s)	81
BspMI	ACCTGC	2 cut(s)	500, 582
BspPI	GGATC	3 cut(s)	211, 439, 495
BspT104I	TTCGAA	1 cut(s)	709
BspT107I	GGYRCC	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	733
BsrI	ACTGG	3 cut(s)	63, 403, 571
BssMI	GATC	5 cut(s)	42, 203, 273, 444, 487
Bst2UI	CCWGG	2 cut(s)	294, 335
Bst4CI	ACNGT	2 cut(s)	428, 589
BstAFI	CTTAAG	1 cut(s)	733
BstBI	TTCGAA	1 cut(s)	709
BstDEI	CTNAG	7 cut(s)	75, 207, 386, 491, 540, 660, 692
BstF5I	GGATG	2 cut(s)	364, 521
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	2 cut(s)	213, 546
BstKTI	GATC	5 cut(s)	45, 206, 276, 447, 490
BstMBI	GATC	5 cut(s)	42, 203, 273, 444, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	663
BstNI	CCWGG	2 cut(s)	294, 335
BstSCI	CCNGG	2 cut(s)	292, 333
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	3 cut(s)	203, 444, 487
BstYI	RGATCY	3 cut(s)	203, 444, 487
BsuRI	GGCC	2 cut(s)	364, 657
BtsCI	GGATG	2 cut(s)	364, 521
BtsI	GCAGTG	3 cut(s)	138, 647, 766
BtsIMutI	CAGTG	4 cut(s)	138, 246, 647, 766
BveI	ACCTGC	2 cut(s)	500, 582
CfoI	GCGC	2 cut(s)	213, 546
Cfr13I	GGNCC	3 cut(s)	362, 462, 656
CsiI	ACCWGGT	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	634
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	4 cut(s)	257, 355, 466, 750
CviJI	RGCY	7 cut(s)	8, 55, 322, 364, 657, 666, 714
CviKI_1	RGCY	7 cut(s)	8, 55, 322, 364, 657, 666, 714
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	7 cut(s)	75, 207, 386, 491, 540, 660, 692
DpnI	GATC	5 cut(s)	44, 205, 275, 446, 489
DpnII	GATC	5 cut(s)	42, 203, 273, 444, 487
Eco24I	GRGCYC	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	292, 333
EcoT38I	GRGCYC	1 cut(s)	668
FaeI	CATG	4 cut(s)	260, 358, 469, 753
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	4 cut(s)	256, 354, 465, 749
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	2 cut(s)	371, 508
FriOI	GRGCYC	1 cut(s)	668
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	2 cut(s)	212, 545
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	2 cut(s)	317, 420
HaeII	RGCGCY	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	364, 657
HapII	CCGG	1 cut(s)	593
HhaI	GCGC	2 cut(s)	213, 546
Hin1II	CATG	4 cut(s)	260, 358, 469, 753
Hin6I	GCGC	2 cut(s)	211, 544
HinP1I	GCGC	2 cut(s)	211, 544
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	5 cut(s)	71, 188, 472, 596, 688
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	2 cut(s)	183, 524
Hpy166II	GTNNAC	3 cut(s)	13, 290, 515
Hpy188I	TCNGA	2 cut(s)	208, 440
Hpy188III	TCNNGA	5 cut(s)	86, 238, 371, 476, 677
Hpy8I	GTNNAC	3 cut(s)	13, 290, 515
HpyCH4III	ACNGT	2 cut(s)	428, 589
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	38, 652
HpyF10VI	GCNNNNNNNGC	1 cut(s)	663
HpyF3I	CTNAG	7 cut(s)	75, 207, 386, 491, 540, 660, 692
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	260, 358, 469, 753
HspAI	GCGC	2 cut(s)	211, 544
Ksp22I	TGATCA	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	42, 203, 273, 444, 487
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	88
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	189, 350, 428
MalI	GATC	5 cut(s)	44, 205, 275, 446, 489
MboI	GATC	5 cut(s)	42, 203, 273, 444, 487
MboII	GAAGA	3 cut(s)	481, 737, 769
MflI	RGATCY	3 cut(s)	203, 444, 487
MhlI	GDGCHC	1 cut(s)	668
MluCI	AATT	6 cut(s)	111, 216, 311, 374, 551, 760
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	82, 93, 336, 341, 414, 678, 727
MseI	TTAA	6 cut(s)	12, 105, 147, 269, 314, 734
MspCI	CTTAAG	1 cut(s)	733
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	2 cut(s)	294, 335
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	2 cut(s)	294, 335
MwoI	GCNNNNNNNGC	1 cut(s)	663
NdeII	GATC	5 cut(s)	42, 203, 273, 444, 487
NlaIII	CATG	4 cut(s)	260, 358, 469, 753
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	189, 350
NspV	TTCGAA	1 cut(s)	709
PaqCI	CACCTGC	1 cut(s)	500
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	4 cut(s)	71, 472, 596, 688
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PshBI	ATTAAT	2 cut(s)	269, 314
Psp6I	CCWGG	2 cut(s)	292, 333
PspGI	CCWGG	2 cut(s)	292, 333
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	3 cut(s)	362, 462, 656
PsuI	RGATCY	3 cut(s)	203, 444, 487
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SaqAI	TTAA	6 cut(s)	12, 105, 147, 269, 314, 734
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	5 cut(s)	42, 203, 273, 444, 487
Sau96I	GGNCC	3 cut(s)	362, 462, 656
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	2 cut(s)	294, 335
SduI	GDGCHC	1 cut(s)	668
SexAI	ACCWGGT	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	709
SinI	GGWCC	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	84, 733
SmoI	CTYRAG	2 cut(s)	84, 733
Sse9I	AATT	6 cut(s)	111, 216, 311, 374, 551, 760
SsiI	CCGC	1 cut(s)	528
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	292, 333
TaaI	ACNGT	2 cut(s)	428, 589
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	709, 755
TasI	AATT	6 cut(s)	111, 216, 311, 374, 551, 760
TfiI	GAWTC	4 cut(s)	71, 472, 596, 688
Tru1I	TTAA	6 cut(s)	12, 105, 147, 269, 314, 734
Tru9I	TTAA	6 cut(s)	12, 105, 147, 269, 314, 734
TscAI	CASTG	4 cut(s)	138, 253, 654, 773
TseFI	GTSAC	2 cut(s)	189, 350
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	2 cut(s)	189, 350
TspDTI	ATGAA	3 cut(s)	19, 482, 510
TspRI	CASTG	4 cut(s)	138, 253, 654, 773
Vha464I	CTTAAG	1 cut(s)	733
VpaK11BI	GGWCC	1 cut(s)	462
VspI	ATTAAT	2 cut(s)	269, 314
XapI	RAATTY	3 cut(s)	374, 551, 760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	472
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.