Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8231443.1

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 757

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8231443.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

gaacgttttcaaaagcttttctgcaccaaacatcaactcattatctggagcgtgcctgcagaaatatccatgtacaaaagttcagtactcattgcatataaattgtggtggaggagcgaccaccattggaggagtcaaatttgaagatgatacagatcttggaggtggagcaaaatttgttccggtgagagctaactggggaaccagtagcactggagttttctgggatactaatgtcacctctaaagactacatagcaaataatgtatcgttacttggaatggaaaactctcagttgtacactcatgcgcgcctcagtcctctttctctcacatattatgcaaactgctta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.55

Weight (kDa)

7.84

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	311
AclI	AACGTT	1 cut(s)	4
AcsI	RAATTY	2 cut(s)	138, 174
AfaI	GTAC	3 cut(s)	74, 87, 300
AgsI	TTSAA	2 cut(s)	11, 144
AluBI	AGCT	2 cut(s)	16, 192
AluI	AGCT	2 cut(s)	16, 192
ApoI	RAATTY	2 cut(s)	138, 174
Asp700I	GAANNNNTTC	1 cut(s)	6
AspLEI	GCGC	2 cut(s)	311, 313
AsuHPI	GGTGA	2 cut(s)	197, 230
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BciVI	GTATCC	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	221
BglII	AGATCT	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	206
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	67, 235
BsaBI	GATNNNNATC	1 cut(s)	154
BsaWI	WCCGGW	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	201, 205, 218
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	306, 329
BseNI	ACTGG	3 cut(s)	201, 205, 218
BsePI	GCGCGC	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	127, 145
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	183
Bsp1407I	TGTACA	2 cut(s)	72, 298
Bsp143I	GATC	1 cut(s)	155
BspCNI	CTCAG	2 cut(s)	305, 328
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	1 cut(s)	203
BspMAI	CTGCAG	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	90
BsrGI	TGTACA	2 cut(s)	72, 298
BsrI	ACTGG	3 cut(s)	201, 205, 218
BssHII	GCGCGC	1 cut(s)	309
BssMI	GATC	1 cut(s)	155
BstAUI	TGTACA	2 cut(s)	72, 298
BstC8I	GCNNGC	3 cut(s)	53, 57, 311
BstDEI	CTNAG	2 cut(s)	292, 315
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	2 cut(s)	311, 313
BstKTI	GATC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	155
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuI	GTATCC	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	53, 57, 311
CfoI	GCGC	2 cut(s)	311, 313
Csp6I	GTAC	3 cut(s)	73, 86, 299
CviAII	CATG	2 cut(s)	70, 306
CviJI	RGCY	2 cut(s)	16, 192
CviKI_1	RGCY	2 cut(s)	16, 192
CviQI	GTAC	3 cut(s)	73, 86, 299
DdeI	CTNAG	2 cut(s)	292, 315
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
FaeI	CATG	2 cut(s)	73, 309
FaiI	YATR	7 cut(s)	71, 97, 99, 255, 307, 335, 340
FatI	CATG	2 cut(s)	69, 305
GlaI	GCGC	2 cut(s)	310, 312
GsuI	CTGGAG	2 cut(s)	67, 235
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	311, 313
Hin1II	CATG	2 cut(s)	73, 309
Hin6I	GCGC	2 cut(s)	309, 311
HinP1I	GCGC	2 cut(s)	309, 311
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	197, 230
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	4
HpyCH4V	TGCA	4 cut(s)	24, 59, 95, 342
HpyF3I	CTNAG	2 cut(s)	292, 315
HpySE526I	ACGT	1 cut(s)	4
Hsp92II	CATG	2 cut(s)	73, 309
HspAI	GCGC	2 cut(s)	309, 311
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	3 cut(s)	48, 114, 168
LpnPI	CCDG	7 cut(s)	31, 69, 182, 196, 199, 209, 218
MaeII	ACGT	1 cut(s)	4
MaeIII	GTNAC	2 cut(s)	236, 271
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	1 cut(s)	156
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	3 cut(s)	101, 138, 174
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	6 cut(s)	105, 123, 156, 251, 324, 331
MroXI	GAANNNNTTC	1 cut(s)	6
MspI	CCGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	311
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	73, 309
NlaIV	GGNNCC	1 cut(s)	203
NmuCI	GTSAC	1 cut(s)	236
PauI	GCGCGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	155
PteI	GCGCGC	1 cut(s)	309
RsaI	GTAC	3 cut(s)	74, 87, 300
RsaNI	GTAC	3 cut(s)	73, 86, 299
Sau3AI	GATC	1 cut(s)	155
ScaI	AGTACT	1 cut(s)	87
SchI	GAGTC	1 cut(s)	142
SetI	ASST	5 cut(s)	7, 18, 167, 194, 243
SfcI	CTRYAG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	101, 138, 174
TaiI	ACGT	1 cut(s)	7
TasI	AATT	3 cut(s)	101, 138, 174
TatI	WGTACW	3 cut(s)	72, 85, 298
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspRI	CASTG	1 cut(s)	218
XapI	RAATTY	2 cut(s)	138, 174
XmnI	GAANNNNTTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.