Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7709949 .. 7712988

Gene Structure 3040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG088800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTTAGTTTGTGATGTTGTTGTTTGTTTCATTATTGGATTGAGTTGCTTCAAACTGCCGGGACTTGCCGAGTCTAAGGTGCCCCAAGATGAGGTTGATGCTCTCCAACAAATTGTAAAAACCATGGGTGCAAAATATTGGAGTTTTGATGGTGATGCTTGCCGGATTGAAATGGTTGGTCTAACAGAGAAGCCACCAAAGGACTCTGAGAGCAGAACTGATTGTCAATGCAACCATGACAACACTGTTTGTCATGTCACAAAACTAATGTTCAAGGGTTATAGTTTACCTGGTTTGCTCCCACCTCAACTAGTCAATCTTCCTTACCTCCAAGAAATTGACTTTGCTTTCAACTATCTCAATGGTACAATACCAAAGGAATGGGCTTCAATGAAATTAACTTATATCTCTGTTCTTGCTAATCGGTTATCCGGCGAAATTCCAAAGGAGTTGGGAAATATAACTACCCTCACATACCTGATGCTTTCCTCCAATCAGCTGACTGGAAACTTGCCAGAGGCATATGCTGGTTTAACAAGTTTGGGAGATTTCCGACTAAATGACAACAACTTTACTGGAGCCATCCCAGGTTTGGTTCAGAATTGGAAATTACTCCGGAGATTGGAAATGCATTCAAGTGGACTCATCGGCCCCATTCCATCAAATATTTCTCTTCTGTATAATCTAAAACTGTTGAGGATTAGTGATATAAATGGGCAAAGCCAGGAATTTCCTTTTCTGAGAAATATGACAGGCATAGTAAAATTGGTTTTGAGAAACTGTAATATTTTTGGAGAGATCCCCACATATATATGGTCTATGACAAATCTGGAAATGTTGGATGTCAGTTTTAACAAGTTAGTGGGTGAACTTTCATCCACAAAAGGTTCTGCGCATCTGAAGTTTGTTTTTTTGACTGGAAACTTGCTAAATGGAGATGTGCCGGATTCATTCTTGCGAGATGGCATCAGCATGTATTTTGTTATATATTCTAAAGTCATTATTCCTTGTACTCAGTTCTCATGTCCCCATAATGTTGTGAAAATGACGGTTTTCTTTTCTATACTTTTATGCAGTGATTTGTCATATAATAACTTGACATTGCAAAGCCCTGAGCAACCTGATTGCCAAGAACACAGGAATCTAAATCTAAACTTGTTTCGAAGCTCTTCAAAGGAGAATTATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

396

Amino Acids

44.39

Weight (kDa)

5.91

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	894
AccB1I	GGYRCC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	615
AclWI	GGATC	1 cut(s)	793
AcsI	RAATTY	2 cut(s)	438, 728
AcuI	CTGAAG	1 cut(s)	920
AfaI	GTAC	2 cut(s)	367, 1012
AfiI	CCNNNNNNNGG	3 cut(s)	91, 592, 622
AgsI	TTSAA	7 cut(s)	52, 170, 274, 352, 390, 636, 1173
AhlI	ACTAGT	1 cut(s)	310
AjnI	CCWGG	3 cut(s)	289, 586, 723
AluBI	AGCT	2 cut(s)	499, 1167
AluI	AGCT	2 cut(s)	499, 1167
AlwI	GGATC	1 cut(s)	793
Aor13HI	TCCGGA	1 cut(s)	615
AoxI	GGCC	1 cut(s)	649
ApoI	RAATTY	2 cut(s)	438, 728
Asp700I	GAANNNNTTC	1 cut(s)	1168
AspLEI	GCGC	1 cut(s)	895
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	164, 878
AsuII	TTCGAA	1 cut(s)	1162
BaeGI	GKGCMC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	79
BccI	CCATC	4 cut(s)	143, 590, 667, 956
BciT130I	CCWGG	3 cut(s)	291, 588, 725
BcnI	CCSGG	1 cut(s)	60
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	1 cut(s)	311
Bme1390I	CCNGG	4 cut(s)	60, 291, 588, 725
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	81, 580, 652
BmrFI	CCNGG	4 cut(s)	60, 291, 588, 725
BmsI	GCATC	5 cut(s)	88, 145, 471, 904, 975
BpmI	CTGGAG	1 cut(s)	597
Bpu10I	CCTNAGC	1 cut(s)	1113
Bpu14I	TTCGAA	1 cut(s)	1162
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	123, 586
BsaWI	WCCGGW	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 592, 622
Bse1I	ACTGG	3 cut(s)	508, 580, 922
Bse3DI	GCAATG	1 cut(s)	1100
BseAI	TCCGGA	1 cut(s)	615
BseBI	CCWGG	3 cut(s)	291, 588, 725
BseDI	CCNNGG	2 cut(s)	123, 586
BseGI	GGATG	3 cut(s)	582, 847, 875
BseLI	CCNNNNNNNGG	3 cut(s)	91, 592, 622
BseMI	GCAATG	1 cut(s)	1100
BseMII	CTCAG	4 cut(s)	198, 731, 1028, 1104
BseNI	ACTGG	3 cut(s)	508, 580, 922
BseSI	GKGCMC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	651
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	5 cut(s)	59, 163, 432, 616, 944
BslFI	GGGAC	2 cut(s)	75, 1011
BslI	CCNNNNNNNGG	3 cut(s)	91, 592, 622
BsmFI	GGGAC	2 cut(s)	75, 1011
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	651
Bsp119I	TTCGAA	1 cut(s)	1162
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp13I	TCCGGA	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	798
Bsp19I	CCATGG	1 cut(s)	123
BspANI	GGCC	1 cut(s)	651
BspCNI	CTCAG	4 cut(s)	199, 732, 1027, 1105
BspEI	TCCGGA	1 cut(s)	615
BspLI	GGNNCC	3 cut(s)	81, 580, 652
BspPI	GGATC	1 cut(s)	793
BspQI	GCTCTTC	1 cut(s)	1174
BspT104I	TTCGAA	1 cut(s)	1162
BspT107I	GGYRCC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	1100
BsrI	ACTGG	3 cut(s)	508, 580, 922
BssECI	CCNNGG	2 cut(s)	123, 586
BssMI	GATC	1 cut(s)	798
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	291, 588, 725
Bst4CI	ACNGT	4 cut(s)	247, 693, 782, 1051
Bst6I	CTCTTC	2 cut(s)	678, 1174
BstBI	TTCGAA	1 cut(s)	1162
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	5 cut(s)	75, 207, 740, 1014, 1113
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	582, 847, 875
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	1 cut(s)	801
BstMBI	GATC	1 cut(s)	798
BstNI	CCWGG	3 cut(s)	291, 588, 725
BstNSI	RCATGY	1 cut(s)	976
BstSCI	CCNGG	4 cut(s)	58, 289, 586, 723
BstSLI	GKGCMC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	798
BstXI	CCANNNNNNTGG	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	798
BsuRI	GGCC	1 cut(s)	651
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	582, 847, 875
BtsI	GCAGTG	1 cut(s)	1081
BtsIMutI	CAGTG	2 cut(s)	243, 1081
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	1 cut(s)	895
Cfr13I	GGNCC	1 cut(s)	650
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	366, 1011
CviAII	CATG	5 cut(s)	124, 236, 254, 973, 1023
CviJI	RGCY	8 cut(s)	193, 386, 499, 581, 651, 723, 1110, 1167
CviKI_1	RGCY	8 cut(s)	193, 386, 499, 581, 651, 723, 1110, 1167
CviQI	GTAC	2 cut(s)	366, 1011
DdeI	CTNAG	5 cut(s)	75, 207, 740, 1014, 1113
DpnI	GATC	1 cut(s)	800
DpnII	GATC	1 cut(s)	798
Eam1104I	CTCTTC	2 cut(s)	678, 1174
EarI	CTCTTC	2 cut(s)	678, 1174
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	920
EcoRII	CCWGG	3 cut(s)	289, 586, 723
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	5 cut(s)	127, 239, 257, 976, 1026
FaqI	GGGAC	2 cut(s)	75, 1011
FatI	CATG	5 cut(s)	123, 235, 253, 972, 1022
FauNDI	CATATG	1 cut(s)	523
FokI	GGATG	3 cut(s)	569, 854, 862
FspBI	CTAG	1 cut(s)	311
FspI	TGCGCA	1 cut(s)	894
GlaI	GCGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	1 cut(s)	651
HapII	CCGG	5 cut(s)	59, 163, 432, 616, 944
HhaI	GCGC	1 cut(s)	895
Hin1II	CATG	5 cut(s)	127, 239, 257, 976, 1026
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HinfI	GANTC	5 cut(s)	71, 203, 642, 947, 1141
HpaII	CCGG	5 cut(s)	59, 163, 432, 616, 944
HphI	GGTGA	2 cut(s)	164, 878
Hpy166II	GTNNAC	3 cut(s)	287, 641, 869
Hpy188I	TCNGA	5 cut(s)	208, 554, 600, 741, 900
Hpy188III	TCNNGA	2 cut(s)	616, 830
Hpy8I	GTNNAC	3 cut(s)	287, 641, 869
HpyCH4III	ACNGT	4 cut(s)	247, 693, 782, 1051
HpyCH4V	TGCA	5 cut(s)	131, 231, 631, 1074, 1105
HpyF3I	CTNAG	5 cut(s)	75, 207, 740, 1014, 1113
Hsp92II	CATG	5 cut(s)	127, 239, 257, 976, 1026
HspAI	GCGC	1 cut(s)	893
Kpn2I	TCCGGA	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	798
LguI	GCTCTTC	1 cut(s)	1174
LmnI	GCTCC	2 cut(s)	303, 578
LweI	GCATC	5 cut(s)	88, 145, 471, 904, 975
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	1 cut(s)	311
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	800
MboI	GATC	1 cut(s)	798
MboII	GAAGA	3 cut(s)	311, 665, 1161
MflI	RGATCY	1 cut(s)	798
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	9 cut(s)	111, 336, 395, 438, 601, 608, 728, 764, 1180
MlyI	GAGTC	3 cut(s)	80, 197, 636
MmeI	TCCRAC	3 cut(s)	130, 577, 819
MnlI	CCTC	7 cut(s)	85, 315, 338, 479, 499, 511, 690
Mph1103I	ATGCAT	1 cut(s)	633
MroI	TCCGGA	1 cut(s)	615
MroXI	GAANNNNTTC	1 cut(s)	1168
MseI	TTAA	3 cut(s)	398, 533, 852
MslI	CAYNNNNRTG	3 cut(s)	636, 811, 971
MspA1I	CMGCKG	1 cut(s)	499
MspI	CCGG	5 cut(s)	59, 163, 432, 616, 944
MspR9I	CCNGG	4 cut(s)	60, 291, 588, 725
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	3 cut(s)	291, 588, 725
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	523
NdeII	GATC	1 cut(s)	798
NlaIII	CATG	5 cut(s)	127, 239, 257, 976, 1026
NlaIV	GGNNCC	3 cut(s)	81, 580, 652
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	256
NsbI	TGCGCA	1 cut(s)	894
NsiI	ATGCAT	1 cut(s)	633
NspI	RCATGY	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	1162
PciSI	GCTCTTC	1 cut(s)	1174
PctI	GAATGC	1 cut(s)	631
PdmI	GAANNNNTTC	1 cut(s)	1168
PfeI	GAWTC	2 cut(s)	947, 1141
PleI	GAGTC	3 cut(s)	79, 197, 636
PpsI	GAGTC	3 cut(s)	79, 197, 636
Psp6I	CCWGG	3 cut(s)	289, 586, 723
PspGI	CCWGG	3 cut(s)	289, 586, 723
PspN4I	GGNNCC	3 cut(s)	81, 580, 652
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	798
PvuII	CAGCTG	1 cut(s)	499
RsaI	GTAC	2 cut(s)	367, 1012
RsaNI	GTAC	2 cut(s)	366, 1011
RseI	CAYNNNNRTG	3 cut(s)	636, 811, 971
SapI	GCTCTTC	1 cut(s)	1174
SaqAI	TTAA	3 cut(s)	398, 533, 852
Sau3AI	GATC	1 cut(s)	798
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	3 cut(s)	80, 197, 636
ScrFI	CCNGG	4 cut(s)	60, 291, 588, 725
SduI	GDGCHC	1 cut(s)	84
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	5 cut(s)	88, 145, 471, 904, 975
SfuI	TTCGAA	1 cut(s)	1162
SmiMI	CAYNNNNRTG	3 cut(s)	636, 811, 971
SpeI	ACTAGT	1 cut(s)	310
Sse9I	AATT	9 cut(s)	111, 336, 395, 438, 601, 608, 728, 764, 1180
SspI	AATATT	3 cut(s)	137, 667, 787
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	4 cut(s)	58, 289, 586, 723
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	4 cut(s)	247, 693, 782, 1051
TaqI	TCGA	1 cut(s)	1162
TasI	AATT	9 cut(s)	111, 336, 395, 438, 601, 608, 728, 764, 1180
TatI	WGTACW	1 cut(s)	1010
TfiI	GAWTC	2 cut(s)	947, 1141
Tru1I	TTAA	3 cut(s)	398, 533, 852
Tru9I	TTAA	3 cut(s)	398, 533, 852
TscAI	CASTG	2 cut(s)	250, 1081
TseFI	GTSAC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	19, 407, 864, 939
TspRI	CASTG	2 cut(s)	250, 1081
XapI	RAATTY	2 cut(s)	438, 728
XceI	RCATGY	1 cut(s)	976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	1168
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.