Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Reverse (-)

23755640 .. 23757020

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30929

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTGTGTGCGCGCGCGTGCGCTCGCTTCCCTTGCTGGAAACCGTTTAACAGGTTCTATCCCCATTGAGATCGGAAATATTAGCACCCTGCAAAGTTTAGTAATTCAGGCTAGTGGTTTGACTGGGCCAATTCCATCCAACATCTCTGTTTTGAAGGAATTAACTGACTCTGTTAGTATAGCATTTGAGTTAATAGCTATTTATAAATTCAGAACAGATTTGGAATTATGCAACTGCTATTCATGGTCGATTTTAACTTGCAGGAGAATTACTGACTTGGATGGACCTGAAGCAACTTTTCCTCCACTTGATAATATGACAAAACTGAAAACACTGATGTTGAGGAATTGCAATCTTATTGGAGAGCTACCTACGTATCTTGCGAATCTGACAGAGTTGGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

135

Amino Acids

14.79

Weight (kDa)

5.04

Isoelectric Point (pI)

38.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AccII	CGCG	3 cut(s)	12, 14, 16
AcsI	RAATTY	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	309
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	2 cut(s)	197, 367
AluI	AGCT	2 cut(s)	197, 367
AoxI	GGCC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	206
AspLEI	GCGC	4 cut(s)	12, 14, 16, 22
AspS9I	GGNCC	2 cut(s)	125, 284
AvaII	GGWCC	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	359, 392
BccI	CCATC	2 cut(s)	142, 275
BfaI	CTAG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	125, 284
BmrI	ACTGGG	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	132
BsaAI	YACGTR	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bse1I	ACTGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	134, 286
BseNI	ACTGG	1 cut(s)	127
BsePI	GCGCGC	2 cut(s)	10, 12
Bsh1236I	CGCG	3 cut(s)	12, 14, 16
BshFI	GGCC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	3 cut(s)	12, 14, 16
BsrI	ACTGG	1 cut(s)	127
BssHII	GCGCGC	2 cut(s)	10, 12
BssMI	GATC	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	375
BstC8I	GCNNGC	4 cut(s)	12, 14, 18, 24
BstF5I	GGATG	2 cut(s)	134, 286
BstFNI	CGCG	3 cut(s)	12, 14, 16
BstHHI	GCGC	4 cut(s)	12, 14, 16, 22
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	406
BstSNI	TACGTA	1 cut(s)	375
BstUI	CGCG	3 cut(s)	12, 14, 16
BsuRI	GGCC	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	134, 286
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	4 cut(s)	12, 14, 18, 24
CfoI	GCGC	4 cut(s)	12, 14, 16, 22
Cfr13I	GGNCC	2 cut(s)	125, 284
CviAII	CATG	2 cut(s)	243, 403
CviJI	RGCY	4 cut(s)	110, 127, 197, 367
CviKI_1	RGCY	4 cut(s)	110, 127, 197, 367
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eco105I	TACGTA	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	309
FaeI	CATG	2 cut(s)	246, 406
FaiI	YATR	6 cut(s)	179, 204, 229, 244, 317, 404
FatI	CATG	2 cut(s)	242, 402
FokI	GGATG	2 cut(s)	121, 293
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	4 cut(s)	11, 13, 15, 21
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	4 cut(s)	12, 14, 16, 22
Hin1II	CATG	2 cut(s)	246, 406
Hin6I	GCGC	4 cut(s)	10, 12, 14, 20
HinP1I	GCGC	4 cut(s)	10, 12, 14, 20
HinfI	GANTC	2 cut(s)	167, 385
Hpy188I	TCNGA	3 cut(s)	74, 212, 390
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	4 cut(s)	91, 231, 261, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	246, 406
HspAI	GCGC	4 cut(s)	10, 12, 14, 20
Kzo9I	GATC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	21, 36, 92, 101, 108, 247, 300
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	1 cut(s)	374
MalI	GATC	1 cut(s)	71
MauBI	CGCGCGCG	1 cut(s)	12
MboI	GATC	1 cut(s)	69
MluCI	AATT	7 cut(s)	102, 129, 158, 206, 224, 267, 346
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	162, 378
MnlI	CCTC	2 cut(s)	312, 336
MseI	TTAA	4 cut(s)	47, 161, 191, 254
MvnI	CGCG	3 cut(s)	12, 14, 16
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	246, 406
NspI	RCATGY	1 cut(s)	406
PauI	GCGCGC	2 cut(s)	10, 12
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	385
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	375
PscI	ACATGT	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	125, 284
PteI	GCGCGC	2 cut(s)	10, 12
SaqAI	TTAA	4 cut(s)	47, 161, 191, 254
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	125, 284
SchI	GAGTC	1 cut(s)	161
SetI	ASST	6 cut(s)	55, 199, 289, 369, 373, 377
SinI	GGWCC	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	375
Sse9I	AATT	7 cut(s)	102, 129, 158, 206, 224, 267, 346
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	248
TasI	AATT	7 cut(s)	102, 129, 158, 206, 224, 267, 346
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	4 cut(s)	47, 161, 191, 254
Tru9I	TTAA	4 cut(s)	47, 161, 191, 254
TscAI	CASTG	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	206
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.