Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018966.1

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Reverse (-)

6308 .. 7688

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018966.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggttggtctaacagagaagccgccagaggaatctgagagcacaactgaatgtgaatgccacttcgagaacaacacagtttgtcatgtcgtcagattagtgctcaagcgtcatagtttacctggtttgcttacacctgaactaatcaagctcccttacctccgagaaatgtcccttgaagcaaaacagttttttggcattcttcctgctgagcttggttacctgatcaatctgcagactttggtgctttcctctaatgcgccgactggaaagctgccaaagacatttgctcgcactacaccaatttttcaatcagacgacagtgaaaaactgtcgtctgattataggattcgtttttggatggagatgttgttttgctctacagtagttggtctacctttcttggtgccaccaatgattttgacaggagaattattcaaagcgtggagttcatgttctcaggtaacttgccagttacaaaatcttttgattccagacttgttacattcctcgcaagccacacagttcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

177

Amino Acids

19.95

Weight (kDa)

5.56

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	406
AccI	GTMKAC	1 cut(s)	394
AciI	CCGC	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	179, 311, 439
AjnI	CCWGG	1 cut(s)	121
AloI	GAACNNNNNNTCC	2 cut(s)	439, 471
AluBI	AGCT	3 cut(s)	151, 214, 274
AluI	AGCT	3 cut(s)	151, 214, 274
Alw21I	GWGCWC	2 cut(s)	44, 105
ApeKI	GCWGC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	44, 105
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	225
BfmI	CTRYAG	2 cut(s)	233, 381
BisI	GCNGC	2 cut(s)	23, 275
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	2 cut(s)	24, 276
Bme1390I	CCNGG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	89
BsaXI	ACNNNNNCTCC	4 cut(s)	356, 386, 439, 469
Bse1I	ACTGG	2 cut(s)	271, 472
BseBI	CCWGG	1 cut(s)	123
BseGI	GGATG	1 cut(s)	366
BseMII	CTCAG	3 cut(s)	27, 201, 473
BseNI	ACTGG	2 cut(s)	271, 472
BseXI	GCAGC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	406
BsiHKAI	GWGCWC	2 cut(s)	44, 105
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	2 cut(s)	62, 198
Bsp1286I	GDGCHC	2 cut(s)	44, 105
Bsp143I	GATC	1 cut(s)	225
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	3 cut(s)	28, 202, 472
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	271, 472
BssMI	GATC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	6 cut(s)	79, 189, 323, 333, 385, 525
BstC8I	GCNNGC	2 cut(s)	292, 516
BstDEI	CTNAG	3 cut(s)	36, 210, 459
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	366
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	123
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	2 cut(s)	233, 381
BstV1I	GCAGC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	366
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	292, 516
CfoI	GCGC	1 cut(s)	262
CseI	GACGC	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	121
CviAII	CATG	2 cut(s)	86, 453
CviJI	RGCY	5 cut(s)	22, 151, 214, 274, 518
CviKI_1	RGCY	5 cut(s)	22, 151, 214, 274, 518
DdeI	CTNAG	3 cut(s)	36, 210, 459
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	121
FaeI	CATG	2 cut(s)	89, 456
FaiI	YATR	4 cut(s)	87, 114, 345, 454
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	85, 452
FbaI	TGATCA	1 cut(s)	225
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	2 cut(s)	23, 275
FokI	GGATG	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	23, 275
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	2 cut(s)	23, 275
HgaI	GACGC	1 cut(s)	98
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	89, 456
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HinfI	GANTC	3 cut(s)	32, 349, 490
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	3 cut(s)	119, 395, 528
Hpy188I	TCNGA	5 cut(s)	37, 95, 164, 316, 340
Hpy188III	TCNNGA	2 cut(s)	67, 494
Hpy8I	GTNNAC	3 cut(s)	119, 395, 528
HpyCH4III	ACNGT	6 cut(s)	79, 189, 323, 333, 385, 525
HpyCH4V	TGCA	1 cut(s)	235
HpyF3I	CTNAG	3 cut(s)	36, 210, 459
Hsp92II	CATG	2 cut(s)	89, 456
HspAI	GCGC	1 cut(s)	260
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	261
MabI	ACCWGGT	1 cut(s)	121
MaeIII	GTNAC	4 cut(s)	218, 463, 474, 501
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	44, 105
MluCI	AATT	2 cut(s)	303, 431
MnlI	CCTC	4 cut(s)	22, 170, 262, 520
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	2 cut(s)	62, 198
MvaI	CCWGG	1 cut(s)	123
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	2 cut(s)	89, 456
NlaIV	GGNNCC	1 cut(s)	408
PctI	GAATGC	2 cut(s)	62, 198
PfeI	GAWTC	3 cut(s)	32, 349, 490
PkrI	GCNGC	2 cut(s)	24, 276
Psp6I	CCWGG	1 cut(s)	121
PspEI	GGTNACC	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	237
SatI	GCNGC	2 cut(s)	23, 275
Sau3AI	GATC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	44, 105
SexAI	ACCWGGT	1 cut(s)	121
SfcI	CTRYAG	2 cut(s)	233, 381
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	303, 431
SsiI	CCGC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	6 cut(s)	79, 189, 323, 333, 385, 525
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	303, 431
TauI	GCSGC	1 cut(s)	25
TfiI	GAWTC	3 cut(s)	32, 349, 490
TscAI	CASTG	1 cut(s)	328
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.