Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7905528 .. 7912948

Gene Structure 7421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG089400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTTTCCGACTTTCCCCAACCAGTTCAGACTTTGCTTGCCAAAGCATTTTACTGTTTATGGATGTTTACATTGTCTGACAAGTACATTGTAACCAGTCTTGCACTACTTCTTTCACTAGTACTACTGCCCAAAAGCTTCAATCTTTATTCTCCAGTCTTCATCATCATGCTACCCAGAAGCAAAAGCCGCTTGCTTTTTATATTGCTCACTTTGTTAAGCTGCTTATTCAGCTTGGTGAGATCTCAGACTCAGCAAGTTCCTCAAGATGAAATTGATGCTCTGGAAGAAATTACTCGTACACTGGGTGCTAAGTATTGGAAGTTTAATGGTGGTTCTTGCCAAATTGAAATGGTTGGGGTAACTACGGAGCCGCCAAAGGATGCTGAGAGTAGCATTGAATGTCAATGCAACAGCACTGTCTGTCACGTCGTAAAGCTGAGGATTAGTGATTTAAATGGAATAGAGCAGGATTTTCCTATGTTGGAAAACATGCCTGGCCTAGTCAGATTGATTCTGAGAAACTGTAACATTTCTGGAGAGATCCCTCCTTACCTATGGACCCTGCAGAAACTGGAAATGCTGGATCTGAGTTTTAACAAGTTGATAGGAGAAATTCCAACCACAATCAGCTTAAAGCGTTTGAGATTCCTATTCTTAATTGGCAACTCCTTGAGTGGAAGTGTACCAGACTCAATCTTCATAGATGGAAGCAACGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACAAGTCAGAATACTCTCTAGAATCCTATGGTGGAGAGGCAACTTACCAGGAAAACTGGGCAGACAGAAAGTACAAGAATACAAAAGGGTTATTGATCAATGGACACTTGAAAAGCCCTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

301

Amino Acids

34.0

Weight (kDa)

5.24

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	167 - 206	9.1e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	772
AciI	CCGC	2 cut(s)	190, 374
AclI	AACGTT	1 cut(s)	717
AclWI	GGATC	2 cut(s)	538, 594
AcsI	RAATTY	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	6 cut(s)	86, 123, 301, 687, 731, 851
AgsI	TTSAA	4 cut(s)	142, 350, 401, 889
AhlI	ACTAGT	1 cut(s)	118
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	496, 825
AluBI	AGCT	5 cut(s)	138, 222, 234, 439, 633
AluI	AGCT	5 cut(s)	138, 222, 234, 439, 633
AlwI	GGATC	2 cut(s)	538, 594
AlwNI	CAGNNNCTG	1 cut(s)	574
AoxI	GGCC	2 cut(s)	499, 751
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	561, 752
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	561
BarI	GAAGNNNNNNTAC	2 cut(s)	722, 754
BbsI	GAAGAC	1 cut(s)	151
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	701
BciT130I	CCWGG	2 cut(s)	498, 827
BclI	TGATCA	1 cut(s)	873
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	3 cut(s)	119, 503, 797
BfmI	CTRYAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	772
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	3 cut(s)	190, 223, 374
BlsI	GCNGC	3 cut(s)	191, 224, 375
BmcAI	AGTACT	1 cut(s)	123
Bme1390I	CCNGG	2 cut(s)	498, 827
Bme18I	GGWCC	1 cut(s)	561
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	561, 752
BmiI	GGNNCC	2 cut(s)	372, 563
BmrFI	CCNGG	2 cut(s)	498, 827
BmrI	ACTGGG	2 cut(s)	314, 844
BmsI	GCATC	2 cut(s)	268, 373
BmuI	ACTGGG	2 cut(s)	314, 844
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	138, 558
Bpu10I	CCTNAGC	2 cut(s)	440, 756
BpuEI	CTTGAG	2 cut(s)	249, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	767, 797
Bse1I	ACTGG	6 cut(s)	23, 96, 155, 309, 579, 839
BseBI	CCWGG	2 cut(s)	498, 827
BseGI	GGATG	2 cut(s)	69, 388
BseMII	CTCAG	7 cut(s)	260, 266, 378, 431, 509, 581, 747
BseNI	ACTGG	6 cut(s)	23, 96, 155, 309, 579, 839
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	2 cut(s)	501, 753
BsnI	GGCC	2 cut(s)	501, 753
Bsp143I	GATC	5 cut(s)	242, 543, 586, 721, 873
BspACI	CCGC	2 cut(s)	190, 374
BspANI	GGCC	2 cut(s)	501, 753
BspCNI	CTCAG	7 cut(s)	259, 265, 379, 432, 510, 582, 748
BspLI	GGNNCC	2 cut(s)	372, 563
BspMAI	CTGCAG	1 cut(s)	570
BspMI	ACCTGC	1 cut(s)	772
BspPI	GGATC	2 cut(s)	538, 594
BsrI	ACTGG	6 cut(s)	23, 96, 155, 309, 579, 839
BssMI	GATC	5 cut(s)	242, 543, 586, 721, 873
Bst2UI	CCWGG	2 cut(s)	498, 827
Bst4CI	ACNGT	3 cut(s)	56, 421, 527
BstC8I	GCNNGC	2 cut(s)	39, 194
BstDEI	CTNAG	8 cut(s)	246, 252, 312, 387, 440, 518, 590, 756
BstF5I	GGATG	2 cut(s)	69, 388
BstKTI	GATC	5 cut(s)	245, 546, 589, 724, 876
BstMBI	GATC	5 cut(s)	242, 543, 586, 721, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 231
BstNI	CCWGG	2 cut(s)	498, 827
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	496, 825
BstSFI	CTRYAG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	3 cut(s)	242, 543, 586
BstYI	RGATCY	3 cut(s)	242, 543, 586
BsuRI	GGCC	2 cut(s)	501, 753
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	69, 388
BtsIMutI	CAGTG	2 cut(s)	302, 417
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	2 cut(s)	39, 194
CaiI	CAGNNNCTG	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	561, 752
Csp6I	GTAC	6 cut(s)	85, 122, 300, 686, 730, 850
CviAII	CATG	3 cut(s)	169, 493, 744
CviQI	GTAC	6 cut(s)	85, 122, 300, 686, 730, 850
DdeI	CTNAG	8 cut(s)	246, 252, 312, 387, 440, 518, 590, 756
DpnI	GATC	5 cut(s)	244, 545, 588, 723, 875
DpnII	GATC	5 cut(s)	242, 543, 586, 721, 873
DraI	TTTAAA	1 cut(s)	456
DraIII	CACNNNGTG	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRII	CCWGG	2 cut(s)	496, 825
FaeI	CATG	3 cut(s)	172, 496, 747
FaiI	YATR	9 cut(s)	61, 170, 203, 482, 494, 559, 704, 745, 807
FatI	CATG	3 cut(s)	168, 492, 743
FbaI	TGATCA	1 cut(s)	873
Fnu4HI	GCNGC	3 cut(s)	190, 223, 374
FokI	GGATG	2 cut(s)	76, 395
Fsp4HI	GCNGC	3 cut(s)	190, 223, 374
FspBI	CTAG	3 cut(s)	119, 503, 797
GluI	GCNGC	3 cut(s)	190, 223, 374
GsuI	CTGGAG	2 cut(s)	138, 558
HaeIII	GGCC	2 cut(s)	501, 753
Hin1II	CATG	3 cut(s)	172, 496, 747
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	5 cut(s)	250, 514, 648, 692, 800
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	69, 302, 686
Hpy188I	TCNGA	8 cut(s)	10, 30, 79, 249, 509, 519, 591, 787
Hpy188III	TCNNGA	5 cut(s)	266, 284, 537, 773, 797
Hpy8I	GTNNAC	3 cut(s)	69, 302, 686
Hpy99I	CGWCG	1 cut(s)	434
HpyCH4III	ACNGT	3 cut(s)	56, 421, 527
HpyCH4IV	ACGT	2 cut(s)	429, 717
HpyCH4V	TGCA	3 cut(s)	104, 411, 568
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 231
HpyF3I	CTNAG	8 cut(s)	246, 252, 312, 387, 440, 518, 590, 756
HpySE526I	ACGT	2 cut(s)	429, 717
Hsp92II	CATG	3 cut(s)	172, 496, 747
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	5 cut(s)	242, 543, 586, 721, 873
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	2 cut(s)	268, 373
MaeI	CTAG	3 cut(s)	119, 503, 797
MaeII	ACGT	2 cut(s)	429, 717
MaeIII	GTNAC	4 cut(s)	91, 361, 425, 527
MalI	GATC	5 cut(s)	244, 545, 588, 723, 875
MboI	GATC	5 cut(s)	242, 543, 586, 721, 873
MboII	GAAGA	3 cut(s)	151, 299, 691
MflI	RGATCY	3 cut(s)	242, 543, 586
MluCI	AATT	5 cut(s)	273, 291, 345, 615, 660
MlyI	GAGTC	2 cut(s)	244, 686
MmeI	TCCRAC	3 cut(s)	33, 465, 644
MnlI	CCTC	4 cut(s)	273, 435, 558, 808
MseI	TTAA	6 cut(s)	218, 327, 455, 597, 635, 659
MslI	CAYNNNNRTG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	498, 827
MvaI	CCWGG	2 cut(s)	498, 827
MwoI	GCNNNNNNNGC	2 cut(s)	189, 231
NdeII	GATC	5 cut(s)	242, 543, 586, 721, 873
NlaIII	CATG	3 cut(s)	172, 496, 747
NlaIV	GGNNCC	2 cut(s)	372, 563
NmuCI	GTSAC	1 cut(s)	425
NspI	RCATGY	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	514, 648, 800
PkrI	GCNGC	3 cut(s)	191, 224, 375
PleI	GAGTC	2 cut(s)	244, 686
PpsI	GAGTC	2 cut(s)	244, 686
Psp1406I	AACGTT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	496, 825
PspGI	CCWGG	2 cut(s)	496, 825
PspN4I	GGNNCC	2 cut(s)	372, 563
PspPI	GGNCC	2 cut(s)	561, 752
PstI	CTGCAG	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	574
PsuI	RGATCY	3 cut(s)	242, 543, 586
RsaI	GTAC	6 cut(s)	86, 123, 301, 687, 731, 851
RsaNI	GTAC	6 cut(s)	85, 122, 300, 686, 730, 850
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	6 cut(s)	218, 327, 455, 597, 635, 659
SatI	GCNGC	3 cut(s)	190, 223, 374
Sau3AI	GATC	5 cut(s)	242, 543, 586, 721, 873
Sau96I	GGNCC	2 cut(s)	561, 752
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	2 cut(s)	244, 686
ScrFI	CCNGG	2 cut(s)	498, 827
SetI	ASST	9 cut(s)	140, 224, 236, 432, 441, 558, 635, 720, 766
SfaNI	GCATC	2 cut(s)	268, 373
SfcI	CTRYAG	1 cut(s)	566
SinI	GGWCC	1 cut(s)	561
SmiI	ATTTAAAT	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	2 cut(s)	264, 673
SmoI	CTYRAG	2 cut(s)	264, 673
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	5 cut(s)	273, 291, 345, 615, 660
SsiI	CCGC	2 cut(s)	190, 374
SspMI	CTAG	3 cut(s)	119, 503, 797
StyD4I	CCNGG	2 cut(s)	496, 825
SwaI	ATTTAAAT	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	56, 421, 527
TaiI	ACGT	2 cut(s)	432, 720
TasI	AATT	5 cut(s)	273, 291, 345, 615, 660
TatI	WGTACW	3 cut(s)	84, 121, 849
TauI	GCSGC	2 cut(s)	192, 376
TfiI	GAWTC	3 cut(s)	514, 648, 800
Tru1I	TTAA	6 cut(s)	218, 327, 455, 597, 635, 659
Tru9I	TTAA	6 cut(s)	218, 327, 455, 597, 635, 659
TscAI	CASTG	2 cut(s)	309, 424
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	222
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	151, 285, 691
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	309, 424
VpaK11BI	GGWCC	1 cut(s)	561
XapI	RAATTY	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	3 cut(s)	119, 503, 797
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.