Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002519.1

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

27222 .. 28757

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002519.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgttggcttgtagacactttgtttgcttcattgttgcagtgagttgcttcaagctgataggacttgctgagtctagggtgcctcaacaggaagttgatgctctccaacgaattgctaccacgattggcgcaatatattggaagtttaatggtgatgcttgccggattgaaatggttggtctaacagagaagccgccagaggaatctgagagcacaactgaatgtgaatgccacttcgagaacaacacagtttgtcatgtcgtcagattatctattcttgttaatcgcttatcggggaaaattccaaaggagttgggaaatataactactctcaagtacctgtcccttgaagcaaaccagttttttggcattcttcctgctgagcttggttacctgatcaatctgcagactttggtgctttcctctaatgcgctgactggaaagttgccaaagacatttgttcggctaacaaatttgacagatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

6.29

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	1 cut(s)	194
AcsI	RAATTY	2 cut(s)	300, 472
AfaI	GTAC	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	52, 170, 350
AluBI	AGCT	2 cut(s)	55, 385
AluI	AGCT	2 cut(s)	55, 385
Alw21I	GWGCWC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	300, 472
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	131, 433
AsuHPI	GGTGA	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	215
BclI	TGATCA	1 cut(s)	396
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	404
BisI	GCNGC	1 cut(s)	194
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	81
BmsI	GCATC	2 cut(s)	88, 145
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	358, 442
BseMII	CTCAG	3 cut(s)	60, 198, 372
BseNI	ACTGG	2 cut(s)	358, 442
BshNI	GGYRCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	328
BsmI	GAATGC	2 cut(s)	233, 369
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	396
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	194
BspCNI	CTCAG	3 cut(s)	61, 199, 373
BspLI	GGNNCC	1 cut(s)	81
BspMAI	CTGCAG	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	358, 442
BssMI	GATC	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	3 cut(s)	69, 207, 381
BstEII	GGTNACC	1 cut(s)	389
BstHHI	GCGC	2 cut(s)	131, 433
BstKTI	GATC	1 cut(s)	399
BstMBI	GATC	1 cut(s)	396
BstPI	GGTNACC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	2 cut(s)	131, 433
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	8, 55, 193, 385, 466
CviKI_1	RGCY	5 cut(s)	8, 55, 193, 385, 466
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	3 cut(s)	69, 207, 381
DpnI	GATC	1 cut(s)	398
DpnII	GATC	1 cut(s)	396
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
FaeI	CATG	1 cut(s)	260
FaiI	YATR	4 cut(s)	136, 258, 323, 485
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	256
FbaI	TGATCA	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	2 cut(s)	130, 432
GluI	GCNGC	1 cut(s)	194
HapII	CCGG	1 cut(s)	163
HhaI	GCGC	2 cut(s)	131, 433
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	2 cut(s)	129, 431
HinP1I	GCGC	2 cut(s)	129, 431
HinfI	GANTC	2 cut(s)	71, 203
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	208, 266
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	38, 406
HpyF3I	CTNAG	3 cut(s)	69, 207, 381
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	2 cut(s)	129, 431
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	396
LpnPI	CCDG	8 cut(s)	74, 176, 210, 353, 371, 390, 407, 423
LweI	GCATC	2 cut(s)	88, 145
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	398
MboI	GATC	1 cut(s)	396
MboII	GAAGA	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	3 cut(s)	111, 300, 472
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	130
MnlI	CCTC	3 cut(s)	93, 193, 433
MseI	TTAA	2 cut(s)	147, 282
MspI	CCGG	1 cut(s)	163
Mva1269I	GAATGC	2 cut(s)	233, 369
NdeII	GATC	1 cut(s)	396
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	81
PctI	GAATGC	2 cut(s)	233, 369
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	147, 282
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	215
SetI	ASST	4 cut(s)	57, 342, 387, 396
SfaNI	GCATC	2 cut(s)	88, 145
SfcI	CTRYAG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	111, 300, 472
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	111, 300, 472
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	147, 282
Tru9I	TTAA	2 cut(s)	147, 282
TscAI	CASTG	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	2 cut(s)	300, 472
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.