Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

31272661 .. 31275991

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0218700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGATTAGAGTGCGGATTTGGGCAAATCTGGGTGTCTTTATCAGTTTATGTTTGCGGATCTTGGAGCCCAACACTGCAATAGCGGCTGCAATATTTGAATTAAAAGGTAATCTCGGTATACAGATAAACGTAAGATTTAGAAAGTGTTATGGTATTATGGTCACTGCTTTCTGTATTATGGGATTCAGATTTGTGTTGTTGCTTGTTATAGCATTGCTGAATTGGATGGAAGAAAGAATGCATCCCTTTAATCAGGAAATTCTTTTGAGCTCCAGAAAGTTGGACGGTTTGCCTCGTGGCATAATACAAGCTAGGTCGGATTTAGAACTGAGGCCTTTATGGCTGACTAGTTCAAAGTTAACGTTTCTTCCAGAAAACTTTACGATTATACTATTCCATTATGATGGGAATGTTAAAGGGTGGTGGGATCTTGAGTGGAGTAACCAGGCCATACACATAGTTGCCCACAACCAAACAAAGTGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAAAGAGAATTTGTCAAAATATCTGCTCTCTGCTTTTTCAATATCTAGTGTCACAGTTGGAGATGGTGCTGTTGGAAAGACTTGCCTTCTCATCTCTTACACTAGCAACACTTTTCCTACTGATTATGTTCCAACTGTATTTGACAACTTCAGTGCTAATGTTTTGGTTGATGGGCAGACTGTGAATCTGGGTCTCTGGGATACTGCTGGTGAAGAAGATTATAAAAGGTTGAGGCCTCTTAGTTACAGAGGAGCTGATATTTTTCTTCTTGCCTTTTCTCTCATAAGTAGGCCTAGCTATGAGAACATATCAAAGAAAGTAAGCTCCTTTTTCTCTACCAAGATTCTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

308

Amino Acids

35.34

Weight (kDa)

6.96

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	122 - 194	1.3e-37	Protein of unknown function (DUF707)
Ras	PF00071	208 - 299	1.3e-29	Ras family
Roc	PF08477	208 - 296	1.2e-14	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	795
AccI	GTMKAC	1 cut(s)	118
AciI	CCGC	3 cut(s)	13, 55, 83
AclI	AACGTT	1 cut(s)	362
AclWI	GGATC	2 cut(s)	65, 435
AcsI	RAATTY	2 cut(s)	258, 580
AcuI	CTGAAG	1 cut(s)	706
AgsI	TTSAA	3 cut(s)	98, 354, 612
AhlI	ACTAGT	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	5 cut(s)	270, 311, 827, 870, 897
AluI	AGCT	5 cut(s)	270, 311, 827, 870, 897
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	65, 435
AoxI	GGCC	4 cut(s)	332, 447, 806, 863
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	258, 580
AsuHPI	GGTGA	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	69, 272
BauI	CACGAG	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	4 cut(s)	220, 398, 629, 737
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	770
BcuI	ACTAGT	1 cut(s)	347
BfaI	CTAG	5 cut(s)	312, 348, 618, 675, 867
BfuI	GTATCC	1 cut(s)	766
BglI	GCCNNNNNGGC	1 cut(s)	340
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	770
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	446
BseGI	GGATG	4 cut(s)	231, 241, 505, 553
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	837
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	4 cut(s)	334, 449, 808, 865
BsiHKAI	GWGCWC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	770
BsmI	GAATGC	1 cut(s)	243
BsnI	GGCC	4 cut(s)	334, 449, 808, 865
Bso31I	GGTCTC	1 cut(s)	770
Bsp1286I	GDGCHC	2 cut(s)	69, 272
Bsp143I	GATC	2 cut(s)	57, 427
BspACI	CCGC	3 cut(s)	13, 55, 83
BspANI	GGCC	4 cut(s)	334, 449, 808, 865
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	65, 435
BspTNI	GGTCTC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	212
BssMI	GATC	2 cut(s)	57, 427
BssNAI	GTATAC	1 cut(s)	119
BssSI	CACGAG	1 cut(s)	294
Bst1107I	GTATAC	1 cut(s)	119
Bst2BI	CACGAG	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	4 cut(s)	287, 628, 709, 754
BstDEI	CTNAG	2 cut(s)	329, 812
BstF5I	GGATG	4 cut(s)	231, 241, 505, 553
BstKTI	GATC	2 cut(s)	60, 430
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	2 cut(s)	57, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 340
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	2 cut(s)	57, 427
BstXI	CCANNNNNNTGG	2 cut(s)	280, 404
BstYI	RGATCY	2 cut(s)	57, 427
BstZ17I	GTATAC	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	4 cut(s)	334, 449, 808, 865
BtsCI	GGATG	4 cut(s)	231, 241, 505, 553
BtsI	GCAGTG	2 cut(s)	72, 162
BtsIMutI	CAGTG	3 cut(s)	72, 162, 730
CspCI	CAANNNNNGTGG	2 cut(s)	461, 496
DdeI	CTNAG	2 cut(s)	329, 812
DpnI	GATC	2 cut(s)	59, 429
DpnII	GATC	2 cut(s)	57, 427
DraI	TTTAAA	1 cut(s)	574
Ecl136II	GAGCTC	1 cut(s)	270
Eco147I	AGGCCT	3 cut(s)	334, 808, 865
Eco24I	GRGCYC	2 cut(s)	69, 272
Eco31I	GGTCTC	1 cut(s)	770
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	243
EcoT38I	GRGCYC	2 cut(s)	69, 272
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	84, 87
FokI	GGATG	4 cut(s)	228, 238, 492, 560
FriOI	GRGCYC	2 cut(s)	69, 272
Fsp4HI	GCNGC	2 cut(s)	84, 87
FspBI	CTAG	5 cut(s)	312, 348, 618, 675, 867
GluI	GCNGC	2 cut(s)	84, 87
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	4 cut(s)	334, 449, 808, 865
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	3 cut(s)	183, 757, 916
HpaI	GTTAAC	1 cut(s)	360
HphI	GGTGA	1 cut(s)	794
Hpy166II	GTNNAC	2 cut(s)	119, 360
Hpy188I	TCNGA	2 cut(s)	188, 319
Hpy188III	TCNNGA	5 cut(s)	254, 273, 371, 431, 509
Hpy8I	GTNNAC	2 cut(s)	119, 360
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	4 cut(s)	287, 628, 709, 754
HpyCH4IV	ACGT	2 cut(s)	129, 362
HpyCH4V	TGCA	4 cut(s)	77, 89, 241, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 340
HpyF3I	CTNAG	2 cut(s)	329, 812
HpySE526I	ACGT	2 cut(s)	129, 362
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	57, 427
LmnI	GCTCC	4 cut(s)	64, 275, 824, 902
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	5 cut(s)	312, 348, 618, 675, 867
MaeII	ACGT	2 cut(s)	129, 362
MaeIII	GTNAC	4 cut(s)	160, 440, 622, 815
MalI	GATC	2 cut(s)	59, 429
MboI	GATC	2 cut(s)	57, 427
MboII	GAAGA	6 cut(s)	242, 359, 563, 797, 800, 830
MflI	RGATCY	2 cut(s)	57, 427
MhlI	GDGCHC	2 cut(s)	69, 272
MluCI	AATT	4 cut(s)	98, 220, 258, 580
MmeI	TCCRAC	5 cut(s)	261, 297, 610, 625, 728
MnlI	CCTC	6 cut(s)	303, 324, 559, 798, 815, 819
Mph1103I	ATGCAT	1 cut(s)	243
MseI	TTAA	5 cut(s)	101, 249, 359, 414, 573
MslI	CAYNNNNRTG	2 cut(s)	402, 510
MspR9I	CCNGG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	83, 340
NdeII	GATC	2 cut(s)	57, 427
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	160, 622
NsiI	ATGCAT	1 cut(s)	243
PceI	AGGCCT	3 cut(s)	334, 808, 865
PctI	GAATGC	1 cut(s)	243
PfeI	GAWTC	3 cut(s)	183, 757, 916
PkrI	GCNGC	2 cut(s)	85, 88
PsiI	TTATAA	1 cut(s)	795
Psp124BI	GAGCTC	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	2 cut(s)	57, 427
RseI	CAYNNNNRTG	2 cut(s)	402, 510
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	5 cut(s)	101, 249, 359, 414, 573
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	2 cut(s)	57, 427
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	69, 272
SfaNI	GCATC	1 cut(s)	250
SmiMI	CAYNNNNRTG	2 cut(s)	402, 510
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
SpeI	ACTAGT	1 cut(s)	347
Sse9I	AATT	4 cut(s)	98, 220, 258, 580
SseBI	AGGCCT	3 cut(s)	334, 808, 865
SsiI	CCGC	3 cut(s)	13, 55, 83
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	5 cut(s)	312, 348, 618, 675, 867
SstI	GAGCTC	1 cut(s)	272
StuI	AGGCCT	3 cut(s)	334, 808, 865
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	287, 628, 709, 754
TaiI	ACGT	2 cut(s)	132, 365
TasI	AATT	4 cut(s)	98, 220, 258, 580
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	183, 757, 916
Tru1I	TTAA	5 cut(s)	101, 249, 359, 414, 573
Tru9I	TTAA	5 cut(s)	101, 249, 359, 414, 573
TscAI	CASTG	3 cut(s)	79, 169, 730
TseFI	GTSAC	2 cut(s)	160, 622
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	2 cut(s)	160, 622
TspDTI	ATGAA	1 cut(s)	564
TspRI	CASTG	3 cut(s)	79, 169, 730
XapI	RAATTY	2 cut(s)	258, 580
XmiI	GTMKAC	1 cut(s)	118
XspI	CTAG	5 cut(s)	312, 348, 618, 675, 867
Zsp2I	ATGCAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.