Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8402412 .. 8408375

Gene Structure 5964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG093000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTACCCAGAAGCAAAAGCCGCTTGCTTTTTTCATTGTTCACTTTTTTAAGTTGCTTATTCAGCTTGTTGAGATTTGCTGAGTCTGAGGTTCCCCAAGATGAAATTGATGCTCTGGAAGAAATTACTAGTACAATGGGTGCTAAGTATTGGAAATTCAATGGTGGTTCTTGCCAAATTGAAATGGTTGGGGTAACCATGGAGCCGCCAAAGGAAGCTGAGAGTAGCGTTGAATGTCAATGCAACAACACTGTCTGTCACGTCGTAAAGCTAGGACTCAAGAGGTTAAGTCTACCGGGCACACTTCCACCTCAACTGGTGAAACTTCCTTATCTTAGAGAAATGATATTATCCTCCAATTATTTGACTGGAAACATACCAAAGACATTTGCTGGGCTAAGAAATTTAACAGACTTGATTCTGAGAAACTGTAACATTTCTGGTGAGATCCCTCCTTACCTATGGACACTGCAGAACCTGGAAATGTTGGATGTAAGTTTTAACAAGTTGATAGGGGAAATTCCAACGACAATCAGCTTACAGCGTTTGAGATTCCTATTCTTAACTGGCAACTTTCTGAGTGGAAGTGTACCAGACTCAATCTTCAAAGATGGAAGCAATGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACATGTCAGAATACTTTCTAGTGAATATTTATGAATCTAAACCTGAACTTGTTTCGAAGCTCTTCATCAGAGAGCAACTTAAGGAGAGGTCTTCCGTGCTTGAAGAATTTGATTTGTCCTCGTTGAATCCTATGGTGGAGAGGCAACTTACCAGGAAAACTGGGCAGAAAGAAAGGTCGAGGCACTCAGATCAAAATGGACTGGCCAACAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

299

Amino Acids

33.91

Weight (kDa)

5.66

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	104 - 146	5.2e-06	Leucine rich repeat
LRR_4	PF12799	135 - 174	4.2e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	22, 206
AclWI	GGATC	1 cut(s)	442
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	4 cut(s)	155, 403, 519, 788
AfaI	GTAC	3 cut(s)	133, 591, 635
AflII	CTTAAG	1 cut(s)	761
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	6 cut(s)	160, 182, 233, 607, 785, 808
AhlI	ACTAGT	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	477, 833
AluBI	AGCT	5 cut(s)	66, 218, 271, 537, 742
AluI	AGCT	5 cut(s)	66, 218, 271, 537, 742
AlwI	GGATC	1 cut(s)	442
AlwNI	CAGNNNCTG	1 cut(s)	478
AoxI	GGCC	2 cut(s)	655, 885
ApoI	RAATTY	4 cut(s)	155, 403, 519, 788
Asp700I	GAANNNNTTC	2 cut(s)	696, 743
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	331, 455
AsuII	TTCGAA	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	887
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BbsI	GAAGAC	1 cut(s)	765
BccI	CCATC	1 cut(s)	605
BciT130I	CCWGG	2 cut(s)	479, 835
BcnI	CCSGG	1 cut(s)	297
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	3 cut(s)	129, 272, 701
BfmI	CTRYAG	1 cut(s)	470
BfrI	CTTAAG	1 cut(s)	761
BfuAI	ACCTGC	1 cut(s)	676
BglI	GCCNNNNNGGC	1 cut(s)	893
BisI	GCNGC	2 cut(s)	22, 206
BlsI	GCNGC	2 cut(s)	23, 207
Bme1390I	CCNGG	3 cut(s)	297, 479, 835
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	656
BmiI	GGNNCC	2 cut(s)	93, 204
BmrFI	CCNGG	3 cut(s)	297, 479, 835
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	737
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bse1I	ACTGG	5 cut(s)	321, 373, 571, 847, 888
Bse3DI	GCAATG	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	479, 835
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	625
BseMII	CTCAG	7 cut(s)	72, 78, 210, 413, 569, 651, 882
BseNI	ACTGG	5 cut(s)	321, 373, 571, 847, 888
BseSI	GKGCMC	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	2 cut(s)	657, 887
BsiSI	CCGG	1 cut(s)	296
BsnI	GGCC	2 cut(s)	657, 887
Bsp119I	TTCGAA	1 cut(s)	737
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	447, 625, 871
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	22, 206
BspANI	GGCC	2 cut(s)	657, 887
BspCNI	CTCAG	7 cut(s)	73, 79, 211, 414, 570, 652, 881
BspLI	GGNNCC	2 cut(s)	93, 204
BspMAI	CTGCAG	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	442
BspQI	GCTCTTC	1 cut(s)	749
BspT104I	TTCGAA	1 cut(s)	737
BspTI	CTTAAG	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	625
BsrI	ACTGG	5 cut(s)	321, 373, 571, 847, 888
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	447, 625, 871
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	479, 835
Bst4CI	ACNGT	2 cut(s)	253, 431
Bst6I	CTCTTC	1 cut(s)	749
BstAFI	CTTAAG	1 cut(s)	761
BstBI	TTCGAA	1 cut(s)	737
BstC8I	GCNNGC	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	496
BstKTI	GATC	3 cut(s)	450, 628, 874
BstMBI	GATC	3 cut(s)	447, 625, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 63, 893
BstNI	CCWGG	2 cut(s)	479, 835
BstNSI	RCATGY	1 cut(s)	688
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	295, 477, 833
BstSFI	CTRYAG	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	657, 887
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	249, 467
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	478
Cfr13I	GGNCC	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	132, 590, 634
CviAII	CATG	3 cut(s)	199, 648, 685
CviQI	GTAC	3 cut(s)	132, 590, 634
DpnI	GATC	3 cut(s)	449, 627, 873
DpnII	GATC	3 cut(s)	447, 625, 871
EaeI	YGGCCR	1 cut(s)	885
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Eco130I	CCWWGG	1 cut(s)	198
Eco91I	GGTNACC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	477, 833
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	202, 651, 688
FaiI	YATR	8 cut(s)	200, 377, 463, 649, 686, 714, 815, 898
FatI	CATG	3 cut(s)	198, 647, 684
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	22, 206
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	2 cut(s)	22, 206
FspBI	CTAG	3 cut(s)	129, 272, 701
GluI	GCNGC	2 cut(s)	22, 206
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	657, 887
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	3 cut(s)	202, 651, 688
HinfI	GANTC	7 cut(s)	83, 276, 418, 552, 596, 716, 808
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	331, 455
Hpy166II	GTNNAC	3 cut(s)	42, 293, 590
Hpy188I	TCNGA	6 cut(s)	88, 423, 579, 691, 752, 871
Hpy188III	TCNNGA	3 cut(s)	116, 280, 677
Hpy8I	GTNNAC	3 cut(s)	42, 293, 590
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4III	ACNGT	2 cut(s)	253, 431
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	243, 472
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 63, 893
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	202, 651, 688
Kzo9I	GATC	3 cut(s)	447, 625, 871
LguI	GCTCTTC	1 cut(s)	749
LmnI	GCTCC	1 cut(s)	202
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	3 cut(s)	129, 272, 701
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	193, 257, 431
MalI	GATC	3 cut(s)	449, 627, 873
MboI	GATC	3 cut(s)	447, 625, 871
MboII	GAAGA	5 cut(s)	131, 595, 736, 765, 797
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	302
MlsI	TGGCCA	1 cut(s)	887
MluCI	AATT	8 cut(s)	105, 123, 155, 177, 358, 403, 519, 788
MluNI	TGGCCA	1 cut(s)	887
MlyI	GAGTC	3 cut(s)	92, 270, 590
MmeI	TCCRAC	2 cut(s)	468, 548
MnlI	CCTC	9 cut(s)	82, 276, 321, 364, 462, 762, 811, 816, 855
Mox20I	TGGCCA	1 cut(s)	887
MroXI	GAANNNNTTC	2 cut(s)	696, 743
MscI	TGGCCA	1 cut(s)	887
MseI	TTAA	6 cut(s)	50, 287, 407, 501, 563, 762
Msp20I	TGGCCA	1 cut(s)	887
MspCI	CTTAAG	1 cut(s)	761
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	297, 479, 835
MvaI	CCWGG	2 cut(s)	479, 835
MwoI	GCNNNNNNNGC	3 cut(s)	21, 63, 893
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	3 cut(s)	447, 625, 871
NlaIII	CATG	3 cut(s)	202, 651, 688
NlaIV	GGNNCC	2 cut(s)	93, 204
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	737
PciI	ACATGT	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	749
PdmI	GAANNNNTTC	2 cut(s)	696, 743
PfeI	GAWTC	4 cut(s)	418, 552, 716, 808
PkrI	GCNGC	2 cut(s)	23, 207
PleI	GAGTC	3 cut(s)	91, 270, 590
PpsI	GAGTC	3 cut(s)	91, 270, 590
PscI	ACATGT	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	477, 833
PspEI	GGTNACC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	477, 833
PspN4I	GGNNCC	2 cut(s)	93, 204
PspPI	GGNCC	1 cut(s)	656
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	3 cut(s)	133, 591, 635
RsaNI	GTAC	3 cut(s)	132, 590, 634
SapI	GCTCTTC	1 cut(s)	749
SaqAI	TTAA	6 cut(s)	50, 287, 407, 501, 563, 762
SatI	GCNGC	2 cut(s)	22, 206
Sau3AI	GATC	3 cut(s)	447, 625, 871
Sau96I	GGNCC	1 cut(s)	656
SchI	GAGTC	3 cut(s)	92, 270, 590
ScrFI	CCNGG	3 cut(s)	297, 479, 835
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	470
SfuI	TTCGAA	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	278, 761
SmoI	CTYRAG	2 cut(s)	278, 761
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	8 cut(s)	105, 123, 155, 177, 358, 403, 519, 788
SsiI	CCGC	2 cut(s)	22, 206
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	3 cut(s)	129, 272, 701
StyD4I	CCNGG	3 cut(s)	295, 477, 833
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	253, 431
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	737, 860
TasI	AATT	8 cut(s)	105, 123, 155, 177, 358, 403, 519, 788
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	2 cut(s)	24, 208
TfiI	GAWTC	4 cut(s)	418, 552, 716, 808
Tru1I	TTAA	6 cut(s)	50, 287, 407, 501, 563, 762
Tru9I	TTAA	6 cut(s)	50, 287, 407, 501, 563, 762
TscAI	CASTG	2 cut(s)	256, 474
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	24, 117, 729, 736
TspGWI	ACGGA	1 cut(s)	766
TspRI	CASTG	2 cut(s)	256, 474
Vha464I	CTTAAG	1 cut(s)	761
XapI	RAATTY	4 cut(s)	155, 403, 519, 788
XceI	RCATGY	1 cut(s)	688
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	2 cut(s)	696, 743
XspI	CTAG	3 cut(s)	129, 272, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.