Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7924001 .. 7929523

Gene Structure 5523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG089500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTACCCAGAAGCAAAAGCCGCTTGCTTTTTATATTGGTCACTTTGTTAAGATGCTTATTCAGCTTGGTGAGATCTCAGACTCAGCAAGTTCCCCAAGATGAAATTGATGCTCTGGAAGAAATAACTCGTACACTGGGTGCTAAGTATTGGAAGTTCAATGTTGGTTCTTGCCAAATTGAGACGGTTGGGGTAACTACGGAGCCGCCAGAGGCTGAGTGTAGCATTAAATGTGAAGGCAACAACAGCAGTGTCTGTCACGTCGTAAAGCTAGGCCCCAAGAGGTTTAGTCTACCTGGCACGCTTCCACCTCAACTGGCGAAACTACCTTACCTTAGAGAAATGAGGATTAGTGATATAAATGGAACAGAGCAGGATTTTCCTATGTTGGAAAACATGACTGGCCTAGCCAAATTGATTCTGAGAAACTGTAACATTTCTGGAGAGATCCCTCTTTACATATGGGCAATGCAGAACCTGGAAATGCTGGATCTGAGTTTTAACAAGTTGATAGGAGTAATTCCAAAGACAATTAGCTTGGAGAATTTGAAATTCCTATTCTTAACTGGCAACTCTTTGAGTGGAAGTGTACCAGAATCAATCTTCATAGATGGAAGCAATGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACATGAATCTAAACCTGAACTTGTTTCGAAGCTCTTCATCAGAGACCAACTTAAGGAGAGGTCTTCCGTGCTTGAAGAATTTGATTTGTCCTCGTTATTCAACTTGTTTGCATGTAAATTGTGGTGGGAATGACATTACTGTCAAAGAAAATAAAGAAAGCATTTTGTATCTAGGAGATGGAGAAGTTGAAGGTGGAGTTGCAAACTATTTCATCAAGGATGATCACTATTGGGGATTTAGTAGCACCGGAGACTTCTTGAATGACGACGATTTCCAAAATACACGTTACTCTGTATATCTGGCATCTTTGAATCACTCTGAATTATATAGAACAGCACGCAGAGCTCCAATTTCAATCACTTATTTTCATTATTGCTTAGAAAATGGTGACTATACTGTAAATCTGCACTTTGCAGAGATACAGTTTACAAATAACCAAACATTTACAAGTCTTGGGAGGCGCATATTCGATATCTATATTCAGGTAGCTAGTTACATTGTTAAAATTGTTTCTTTAAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

402

Amino Acids

45.5

Weight (kDa)

5.54

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	262 - 390	1.7e-21	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	821
Acc36I	ACCTGC	1 cut(s)	676
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	22, 206
AclWI	GGATC	2 cut(s)	442, 498
AcsI	RAATTY	3 cut(s)	544, 551, 760
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	133, 591, 635
AfiI	CCNNNNNNNGG	1 cut(s)	735
AflII	CTTAAG	1 cut(s)	733
AflIII	ACRYGT	1 cut(s)	965
AgsI	TTSAA	8 cut(s)	160, 550, 757, 783, 872, 943, 994, 1038
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	295, 477
AluBI	AGCT	6 cut(s)	66, 271, 537, 714, 1028, 1172
AluI	AGCT	6 cut(s)	66, 271, 537, 714, 1028, 1172
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	3 cut(s)	176, 719, 927
AlwI	GGATC	2 cut(s)	442, 498
AlwNI	CAGNNNCTG	3 cut(s)	215, 255, 478
AoxI	GGCC	3 cut(s)	274, 403, 655
ApoI	RAATTY	3 cut(s)	544, 551, 760
Asp700I	GAANNNNTTC	1 cut(s)	715
AspLEI	GCGC	1 cut(s)	1146
AspS9I	GGNCC	2 cut(s)	275, 656
AsuHPI	GGTGA	2 cut(s)	82, 1082
AsuII	TTCGAA	1 cut(s)	709
BanII	GRGCYC	1 cut(s)	1030
BarI	GAAGNNNNNNTAC	2 cut(s)	626, 658
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	1030
BccI	CCATC	2 cut(s)	605, 854
BciT130I	CCWGG	2 cut(s)	297, 479
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	3 cut(s)	176, 719, 927
BfaI	CTAG	4 cut(s)	272, 407, 854, 1173
BfrI	CTTAAG	1 cut(s)	733
BfuAI	ACCTGC	1 cut(s)	676
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	2 cut(s)	22, 206
BlsI	GCNGC	2 cut(s)	23, 207
Bme1390I	CCNGG	2 cut(s)	297, 479
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	275, 656
BmiI	GGNNCC	2 cut(s)	204, 277
BmrFI	CCNGG	2 cut(s)	297, 479
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	3 cut(s)	44, 100, 995
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	709
BsaI	GGTCTC	1 cut(s)	719
BsaWI	WCCGGW	1 cut(s)	929
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	4 cut(s)	141, 321, 406, 571
Bse3DI	GCAATG	2 cut(s)	474, 625
BseBI	CCWGG	2 cut(s)	297, 479
BseGI	GGATG	1 cut(s)	907
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMI	GCAATG	2 cut(s)	474, 625
BseMII	CTCAG	6 cut(s)	92, 98, 207, 413, 485, 651
BseNI	ACTGG	4 cut(s)	141, 321, 406, 571
BsgI	GTGCAG	1 cut(s)	1073
BshFI	GGCC	3 cut(s)	276, 405, 657
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiSI	CCGG	1 cut(s)	930
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	3 cut(s)	176, 719, 927
BsmBI	CGTCTC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	276, 405, 657
Bso31I	GGTCTC	1 cut(s)	719
Bsp119I	TTCGAA	1 cut(s)	709
Bsp1286I	GDGCHC	1 cut(s)	1030
Bsp143I	GATC	5 cut(s)	74, 447, 490, 625, 904
BspACI	CCGC	2 cut(s)	22, 206
BspANI	GGCC	3 cut(s)	276, 405, 657
BspCNI	CTCAG	6 cut(s)	91, 97, 208, 414, 486, 652
BspLI	GGNNCC	2 cut(s)	204, 277
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	2 cut(s)	442, 498
BspQI	GCTCTTC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	709
BspTI	CTTAAG	1 cut(s)	733
BspTNI	GGTCTC	1 cut(s)	719
BsrDI	GCAATG	2 cut(s)	474, 625
BsrI	ACTGG	4 cut(s)	141, 321, 406, 571
BssMI	GATC	5 cut(s)	74, 447, 490, 625, 904
Bst2UI	CCWGG	2 cut(s)	297, 479
Bst4CI	ACNGT	5 cut(s)	187, 431, 823, 1081, 1107
Bst6I	CTCTTC	1 cut(s)	721
BstAFI	CTTAAG	1 cut(s)	733
BstBI	TTCGAA	1 cut(s)	709
BstC8I	GCNNGC	3 cut(s)	26, 302, 1021
BstDEI	CTNAG	9 cut(s)	78, 84, 144, 216, 335, 422, 494, 660, 1060
BstF5I	GGATG	1 cut(s)	907
BstHHI	GCGC	1 cut(s)	1146
BstKTI	GATC	5 cut(s)	77, 450, 493, 628, 907
BstMAI	GTCTC	3 cut(s)	176, 719, 927
BstMBI	GATC	5 cut(s)	74, 447, 490, 625, 904
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 63, 246, 1025
BstNI	CCWGG	2 cut(s)	297, 479
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	2 cut(s)	295, 477
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	3 cut(s)	74, 447, 490
BstYI	RGATCY	3 cut(s)	74, 447, 490
BsuRI	GGCC	3 cut(s)	276, 405, 657
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	907
BtsI	GCAGTG	1 cut(s)	256
BtsIMutI	CAGTG	2 cut(s)	134, 256
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	26, 302, 1021
CaiI	CAGNNNCTG	3 cut(s)	215, 255, 478
CfoI	GCGC	1 cut(s)	1146
Cfr13I	GGNCC	2 cut(s)	275, 656
Csp6I	GTAC	3 cut(s)	132, 590, 634
CviAII	CATG	4 cut(s)	397, 648, 685, 794
CviQI	GTAC	3 cut(s)	132, 590, 634
DdeI	CTNAG	9 cut(s)	78, 84, 144, 216, 335, 422, 494, 660, 1060
DpnI	GATC	5 cut(s)	76, 449, 492, 627, 906
DpnII	GATC	5 cut(s)	74, 447, 490, 625, 904
DraI	TTTAAA	1 cut(s)	1200
DraIII	CACNNNGTG	1 cut(s)	140
DrdI	GACNNNNNNGTC	1 cut(s)	821
DseDI	GACNNNNNNGTC	1 cut(s)	821
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Ecl136II	GAGCTC	1 cut(s)	1028
Eco24I	GRGCYC	1 cut(s)	1030
Eco31I	GGTCTC	1 cut(s)	719
Eco32I	GATATC	1 cut(s)	1156
Eco53kI	GAGCTC	1 cut(s)	1028
EcoICRI	GAGCTC	1 cut(s)	1028
EcoO109I	RGGNCCY	2 cut(s)	275, 656
EcoRII	CCWGG	2 cut(s)	295, 477
EcoRV	GATATC	1 cut(s)	1156
EcoT38I	GRGCYC	1 cut(s)	1030
Esp3I	CGTCTC	1 cut(s)	176
FaeI	CATG	4 cut(s)	400, 651, 688, 797
FatI	CATG	4 cut(s)	396, 647, 684, 793
FauNDI	CATATG	1 cut(s)	461
FbaI	TGATCA	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	22, 206
FokI	GGATG	1 cut(s)	914
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	2 cut(s)	22, 206
FspBI	CTAG	4 cut(s)	272, 407, 854, 1173
GlaI	GCGC	1 cut(s)	1145
GluI	GCNGC	2 cut(s)	22, 206
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	3 cut(s)	276, 405, 657
HapII	CCGG	1 cut(s)	930
HhaI	GCGC	1 cut(s)	1146
Hin1II	CATG	4 cut(s)	400, 651, 688, 797
Hin6I	GCGC	1 cut(s)	1144
HinP1I	GCGC	1 cut(s)	1144
HinfI	GANTC	5 cut(s)	82, 418, 596, 688, 994
HpaII	CCGG	1 cut(s)	930
HphI	GGTGA	2 cut(s)	82, 1082
Hpy166II	GTNNAC	4 cut(s)	134, 293, 590, 1110
Hpy188I	TCNGA	5 cut(s)	81, 423, 495, 724, 1003
Hpy188III	TCNNGA	4 cut(s)	116, 441, 677, 940
Hpy8I	GTNNAC	4 cut(s)	134, 293, 590, 1110
Hpy99I	CGWCG	2 cut(s)	266, 953
HpyAV	CCTTC	2 cut(s)	230, 866
HpyCH4III	ACNGT	5 cut(s)	187, 431, 823, 1081, 1107
HpyCH4IV	ACGT	2 cut(s)	261, 967
HpyCH4V	TGCA	5 cut(s)	472, 793, 884, 1090, 1097
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 63, 246, 1025
HpyF3I	CTNAG	9 cut(s)	78, 84, 144, 216, 335, 422, 494, 660, 1060
HpySE526I	ACGT	2 cut(s)	261, 967
Hsp92II	CATG	4 cut(s)	400, 651, 688, 797
HspAI	GCGC	1 cut(s)	1144
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	5 cut(s)	74, 447, 490, 625, 904
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	202, 1033
LweI	GCATC	3 cut(s)	44, 100, 995
MaeI	CTAG	4 cut(s)	272, 407, 854, 1173
MaeII	ACGT	2 cut(s)	261, 967
MaeIII	GTNAC	7 cut(s)	40, 193, 257, 431, 968, 1070, 1175
MalI	GATC	5 cut(s)	76, 449, 492, 627, 906
MboI	GATC	5 cut(s)	74, 447, 490, 625, 904
MboII	GAAGA	5 cut(s)	131, 595, 708, 737, 769
MflI	RGATCY	3 cut(s)	74, 447, 490
MhlI	GDGCHC	1 cut(s)	1030
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	8 cut(s)	205, 276, 321, 339, 462, 734, 783, 1134
MroXI	GAANNNNTTC	1 cut(s)	715
MseI	TTAA	7 cut(s)	50, 228, 501, 563, 734, 1185, 1199
MspCI	CTTAAG	1 cut(s)	733
MspI	CCGG	1 cut(s)	930
MspR9I	CCNGG	2 cut(s)	297, 479
MvaI	CCWGG	2 cut(s)	297, 479
MwoI	GCNNNNNNNGC	4 cut(s)	21, 63, 246, 1025
NdeI	CATATG	1 cut(s)	461
NdeII	GATC	5 cut(s)	74, 447, 490, 625, 904
NlaIII	CATG	4 cut(s)	400, 651, 688, 797
NlaIV	GGNNCC	2 cut(s)	204, 277
NmuCI	GTSAC	3 cut(s)	40, 257, 1070
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	709
PciSI	GCTCTTC	1 cut(s)	721
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	4 cut(s)	418, 596, 688, 994
PkrI	GCNGC	2 cut(s)	23, 207
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	1030
Psp6I	CCWGG	2 cut(s)	295, 477
PspGI	CCWGG	2 cut(s)	295, 477
PspN4I	GGNNCC	2 cut(s)	204, 277
PspPI	GGNCC	2 cut(s)	275, 656
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PstNI	CAGNNNCTG	3 cut(s)	215, 255, 478
PsuI	RGATCY	3 cut(s)	74, 447, 490
RsaI	GTAC	3 cut(s)	133, 591, 635
RsaNI	GTAC	3 cut(s)	132, 590, 634
SacI	GAGCTC	1 cut(s)	1030
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	7 cut(s)	50, 228, 501, 563, 734, 1185, 1199
SatI	GCNGC	2 cut(s)	22, 206
Sau3AI	GATC	5 cut(s)	74, 447, 490, 625, 904
Sau96I	GGNCC	2 cut(s)	275, 656
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	297, 479
SduI	GDGCHC	1 cut(s)	1030
SfaNI	GCATC	3 cut(s)	44, 100, 995
SfuI	TTCGAA	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	733
SmoI	CTYRAG	1 cut(s)	733
SsiI	CCGC	2 cut(s)	22, 206
SspMI	CTAG	4 cut(s)	272, 407, 854, 1173
SstI	GAGCTC	1 cut(s)	1030
StyD4I	CCNGG	2 cut(s)	295, 477
TaaI	ACNGT	5 cut(s)	187, 431, 823, 1081, 1107
TaiI	ACGT	2 cut(s)	264, 970
TaqI	TCGA	2 cut(s)	709, 1152
TauI	GCSGC	2 cut(s)	24, 208
TfiI	GAWTC	4 cut(s)	418, 596, 688, 994
Tru1I	TTAA	7 cut(s)	50, 228, 501, 563, 734, 1185, 1199
Tru9I	TTAA	7 cut(s)	50, 228, 501, 563, 734, 1185, 1199
TscAI	CASTG	2 cut(s)	141, 256
TseFI	GTSAC	3 cut(s)	40, 257, 1070
Tsp45I	GTSAC	3 cut(s)	40, 257, 1070
TspDTI	ATGAA	6 cut(s)	117, 595, 701, 708, 883, 1040
TspGWI	ACGGA	2 cut(s)	215, 738
TspRI	CASTG	2 cut(s)	141, 256
Vha464I	CTTAAG	1 cut(s)	733
XapI	RAATTY	3 cut(s)	544, 551, 760
XceI	RCATGY	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	4 cut(s)	272, 407, 854, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.