Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8235914 .. 8242423

Gene Structure 6510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTACCCAGAAGCAAAAGCCGCTTGCTTTTTTCATTGGTCACTTTTTTAAGTTGCTTATTCAGCTTGTTGAGATTTGCTGAGTCTGAGGTTCCCCAAGATGAAATTGATGCTCTGGAAGAAATTACTAGTACAATGGGTGCTAAGTATTGGAAGTTCAATGGTGGTTCTTGCCAAATTGAAATGGTTGGGGTAACCATGGAGCCGCCAAAGGAAGCTGAGAGTAGTGTTGAATGTCAATGCAACAACACTGTCTGTCACGTCGTAAAGCTAGGACTCAAGAGGTTTAGTCTACCGGGCACACTTCCACCTCAACTGGTGAAACTTCCTTATCTTAGAGAAATGATTCTGAGAAACTGTAACATTTCTGGTGAGATCCCTCCTTACCTATGGACACTGCAGAACCTGGAAATGTTGGATGTAAGTTTTAATAAGTTGATAGGGGAAATTCCAACGACAATCAGCTTACAGCGTTTGAGATTCCTATTCTTAACTGGCAACTCTCTGAGTGGAAGTGTACCAGACTCAATCTTCAAAGATGGAAGCAATGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACATGTCAGAATACTTTCTAGTGAATATTTATGAATCTAAACCTGAACTTGTTTCGAAGCTCTTCATCAGAGAGCAACTTGATAAACTATGGTGGAAGGACTTCAATATTGAGGACCAGGCCAAGTTGGCTGAAACTCCAGTAGAATCCTATGGTGGAGAGGCAACTTACCAGGAAAACTGGGCAGAAAGAAAGGTTGTTATCATTGTTAGTAATTCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

277

Amino Acids

31.55

Weight (kDa)

4.82

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	22, 206
AclWI	GGATC	1 cut(s)	370
AcsI	RAATTY	1 cut(s)	447
AfaI	GTAC	3 cut(s)	133, 519, 563
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	5 cut(s)	160, 182, 233, 535, 715
AhlI	ACTAGT	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	262
AjnI	CCWGG	3 cut(s)	405, 726, 780
AluBI	AGCT	5 cut(s)	66, 218, 271, 465, 670
AluI	AGCT	5 cut(s)	66, 218, 271, 465, 670
AlwI	GGATC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	2 cut(s)	583, 729
ApoI	RAATTY	1 cut(s)	447
Asp700I	GAANNNNTTC	4 cut(s)	345, 624, 671, 710
AspS9I	GGNCC	2 cut(s)	584, 724
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	331, 383
AsuII	TTCGAA	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	724
BaeGI	GKGCMC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BccI	CCATC	1 cut(s)	533
BciT130I	CCWGG	3 cut(s)	407, 728, 782
BcnI	CCSGG	1 cut(s)	297
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	3 cut(s)	129, 272, 629
BfmI	CTRYAG	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	737
BisI	GCNGC	2 cut(s)	22, 206
BlsI	GCNGC	2 cut(s)	23, 207
Bme1390I	CCNGG	4 cut(s)	297, 407, 728, 782
Bme18I	GGWCC	1 cut(s)	724
BmgBI	CACGTC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	584, 724
BmiI	GGNNCC	2 cut(s)	93, 204
BmrFI	CCNGG	4 cut(s)	297, 407, 728, 782
BmrI	ACTGGG	1 cut(s)	799
BmsI	GCATC	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	799
BpmI	CTGGAG	1 cut(s)	732
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bse1I	ACTGG	4 cut(s)	321, 499, 749, 794
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	3 cut(s)	407, 728, 782
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	6 cut(s)	72, 78, 210, 341, 497, 579
BseNI	ACTGG	4 cut(s)	321, 499, 749, 794
BseSI	GKGCMC	1 cut(s)	302
BshFI	GGCC	2 cut(s)	585, 731
BsiSI	CCGG	1 cut(s)	296
BsnI	GGCC	2 cut(s)	585, 731
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	2 cut(s)	375, 553
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	22, 206
BspANI	GGCC	2 cut(s)	585, 731
BspCNI	CTCAG	6 cut(s)	73, 79, 211, 342, 498, 580
BspLI	GGNNCC	2 cut(s)	93, 204
BspMAI	CTGCAG	1 cut(s)	402
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	677
BspT104I	TTCGAA	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	4 cut(s)	321, 499, 749, 794
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	375, 553
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	3 cut(s)	407, 728, 782
Bst4CI	ACNGT	3 cut(s)	253, 359, 831
Bst6I	CTCTTC	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	8 cut(s)	81, 87, 144, 219, 335, 350, 506, 588
BstDSI	CCRYGG	1 cut(s)	198
BstEII	GGTNACC	1 cut(s)	193
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	378, 556
BstMBI	GATC	2 cut(s)	375, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 63, 737
BstNI	CCWGG	3 cut(s)	407, 728, 782
BstNSI	RCATGY	1 cut(s)	616
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	4 cut(s)	295, 405, 726, 780
BstSFI	CTRYAG	1 cut(s)	398
BstSLI	GKGCMC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	585, 731
BtgI	CCRYGG	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	424
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	2 cut(s)	249, 395
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	1 cut(s)	26
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	584, 724
Csp6I	GTAC	3 cut(s)	132, 518, 562
CviAII	CATG	3 cut(s)	199, 576, 613
CviQI	GTAC	3 cut(s)	132, 518, 562
DdeI	CTNAG	8 cut(s)	81, 87, 144, 219, 335, 350, 506, 588
DpnI	GATC	2 cut(s)	377, 555
DpnII	GATC	2 cut(s)	375, 553
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	724
Eco91I	GGTNACC	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	193
EcoRII	CCWGG	3 cut(s)	405, 726, 780
EcoT14I	CCWWGG	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	202, 579, 616
FaiI	YATR	7 cut(s)	200, 391, 577, 614, 642, 700, 762
FatI	CATG	3 cut(s)	198, 575, 612
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	22, 206
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	2 cut(s)	22, 206
FspBI	CTAG	3 cut(s)	129, 272, 629
GluI	GCNGC	2 cut(s)	22, 206
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	2 cut(s)	585, 731
HapII	CCGG	1 cut(s)	296
Hin1II	CATG	3 cut(s)	202, 579, 616
HinfI	GANTC	7 cut(s)	83, 276, 346, 480, 524, 644, 755
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	331, 383
Hpy166II	GTNNAC	2 cut(s)	293, 518
Hpy188I	TCNGA	5 cut(s)	88, 351, 507, 619, 680
Hpy188III	TCNNGA	3 cut(s)	116, 280, 605
Hpy8I	GTNNAC	2 cut(s)	293, 518
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	1 cut(s)	700
HpyCH4III	ACNGT	3 cut(s)	253, 359, 831
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	243, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 63, 737
HpyF3I	CTNAG	8 cut(s)	81, 87, 144, 219, 335, 350, 506, 588
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	202, 579, 616
Kzo9I	GATC	2 cut(s)	375, 553
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	1 cut(s)	202
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	3 cut(s)	129, 272, 629
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	4 cut(s)	40, 193, 257, 359
MalI	GATC	2 cut(s)	377, 555
MboI	GATC	2 cut(s)	375, 553
MboII	GAAGA	3 cut(s)	131, 523, 664
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	5 cut(s)	105, 123, 177, 447, 823
MlyI	GAGTC	3 cut(s)	92, 270, 518
MmeI	TCCRAC	2 cut(s)	396, 476
MnlI	CCTC	6 cut(s)	82, 276, 321, 390, 715, 763
MroXI	GAANNNNTTC	4 cut(s)	345, 624, 671, 710
MseI	TTAA	3 cut(s)	50, 429, 491
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	4 cut(s)	297, 407, 728, 782
MvaI	CCWGG	3 cut(s)	407, 728, 782
MwoI	GCNNNNNNNGC	3 cut(s)	21, 63, 737
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	375, 553
NlaIII	CATG	3 cut(s)	202, 579, 616
NlaIV	GGNNCC	2 cut(s)	93, 204
NmuCI	GTSAC	2 cut(s)	40, 257
NspI	RCATGY	1 cut(s)	616
NspV	TTCGAA	1 cut(s)	665
PciI	ACATGT	1 cut(s)	612
PciSI	GCTCTTC	1 cut(s)	677
PdmI	GAANNNNTTC	4 cut(s)	345, 624, 671, 710
PfeI	GAWTC	4 cut(s)	346, 480, 644, 755
PkrI	GCNGC	2 cut(s)	23, 207
PleI	GAGTC	3 cut(s)	91, 270, 518
PpsI	GAGTC	3 cut(s)	91, 270, 518
PscI	ACATGT	1 cut(s)	612
Psp6I	CCWGG	3 cut(s)	405, 726, 780
PspEI	GGTNACC	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	405, 726, 780
PspN4I	GGNNCC	2 cut(s)	93, 204
PspPI	GGNCC	2 cut(s)	584, 724
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PstI	CTGCAG	1 cut(s)	402
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	3 cut(s)	133, 519, 563
RsaNI	GTAC	3 cut(s)	132, 518, 562
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	3 cut(s)	50, 429, 491
SatI	GCNGC	2 cut(s)	22, 206
Sau3AI	GATC	2 cut(s)	375, 553
Sau96I	GGNCC	2 cut(s)	584, 724
SchI	GAGTC	3 cut(s)	92, 270, 518
ScrFI	CCNGG	4 cut(s)	297, 407, 728, 782
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	665
SinI	GGWCC	1 cut(s)	724
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	5 cut(s)	105, 123, 177, 447, 823
SsiI	CCGC	2 cut(s)	22, 206
SspI	AATATT	2 cut(s)	637, 718
SspMI	CTAG	3 cut(s)	129, 272, 629
StyD4I	CCNGG	4 cut(s)	295, 405, 726, 780
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	253, 359, 831
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	665
TasI	AATT	5 cut(s)	105, 123, 177, 447, 823
TatI	WGTACW	1 cut(s)	131
TauI	GCSGC	2 cut(s)	24, 208
TfiI	GAWTC	4 cut(s)	346, 480, 644, 755
Tru1I	TTAA	3 cut(s)	50, 429, 491
Tru9I	TTAA	3 cut(s)	50, 429, 491
TscAI	CASTG	2 cut(s)	256, 402
TseFI	GTSAC	2 cut(s)	40, 257
Tsp45I	GTSAC	2 cut(s)	40, 257
TspDTI	ATGAA	4 cut(s)	24, 117, 657, 664
TspRI	CASTG	2 cut(s)	256, 402
VpaK11BI	GGWCC	1 cut(s)	724
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	616
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	4 cut(s)	345, 624, 671, 710
XspI	CTAG	3 cut(s)	129, 272, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.