Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7761431 .. 7767965

Gene Structure 6535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG089300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTGGATAGTTGATGCTCTGGAAGAAATTACTCGTACACTGGGTGCTAAGTATTGGAAGTTCAATGGTGGTTCTTGCCAAATTGAAATGGTTGGGGCAACGACGGAGCCGCCAAAGGATGCTGAGAGTAGCATTAAATGTGAAGGCAACAGCACTGTCCGTCACGTCGTAAAGCTGGTCCTCAAGAGGTTTAGTCTACCTGGCACACTTCCACCTCAACTGGTGAAACTACCTTACCTTAGAGAAGTTGATTTGGTTTACAATTATCTTAGTGGTACAATACCAGCAGAATGGGGTTCAATGCAGTTAACTTCAATCTCTCTTGTTGTAAATCGCTTATCAGGGGAGATTCCAGTGGAGCTGGCAAATATTACCACTCTCAGATATCTAGAAATACATGGGAGTGGGCTTCGTGGACCTATCCCGTCAAACATATCTCTCCTGAGTAATTTAGAACAGTTGAGGATTAGTGATATAAATGGAACAGAGCAGGATTTTCCTATGTTGAAAAACATGACTGGCCTAGTCAAATTGATACTGAGAAACTGTAACATTTCTGGAGAGATCCCTCCTTACCTATGGACACTGCAGAAACTGGAAATGCTGGATCTGAGTTTTAACAAGTTGATAGGAGAAATTCCAACAACAATCAGCTTAGAGCGTTTGAGATTCCTATTCTTAACTGGCAACTCTCTGAGTGGAAGTGTACCAGACTCAATCTTCATAGATGGAAGCAATGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACAAGTCAGAATACTCTCTAGAATCTAAACCTGAACTTGTTTCGAAGCTCTTCATCAGAGACCAACTTGAATCCTATGGTGGAGAGGCAACTTACCAGGAAAACTGGGCAGAAAGAAAGGGGTTGTTGATCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

311

Amino Acids

34.87

Weight (kDa)

5.04

Isoelectric Point (pI)

35.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	174 - 213	7.2e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	793
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	559, 615
AcsI	RAATTY	1 cut(s)	636
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	4 cut(s)	37, 277, 708, 752
AgsI	TTSAA	6 cut(s)	64, 86, 300, 315, 508, 869
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	199, 894
AluBI	AGCT	4 cut(s)	175, 361, 654, 847
AluI	AGCT	4 cut(s)	175, 361, 654, 847
Alw26I	GTCTC	1 cut(s)	852
AlwI	GGATC	2 cut(s)	559, 615
AlwNI	CAGNNNCTG	1 cut(s)	595
AoxI	GGCC	2 cut(s)	520, 772
ApoI	RAATTY	1 cut(s)	636
Asp700I	GAANNNNTTC	1 cut(s)	848
AspS9I	GGNCC	3 cut(s)	178, 416, 773
AsuHPI	GGTGA	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	842
AvaII	GGWCC	2 cut(s)	178, 416
BarI	GAAGNNNNNNTAC	2 cut(s)	743, 775
BccI	CCATC	1 cut(s)	722
BciT130I	CCWGG	2 cut(s)	201, 896
BcoDI	GTCTC	1 cut(s)	852
BfaI	CTAG	3 cut(s)	389, 524, 818
BfmI	CTRYAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	2 cut(s)	201, 896
Bme18I	GGWCC	2 cut(s)	178, 416
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	178, 416, 773
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	201, 896
BmrI	ACTGGG	2 cut(s)	50, 913
BmsI	GCATC	2 cut(s)	4, 109
BmuI	ACTGGG	2 cut(s)	50, 913
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	777
Bpu14I	TTCGAA	1 cut(s)	842
BpuEI	CTTGAG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	852
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bse1I	ACTGG	7 cut(s)	45, 225, 353, 523, 600, 688, 908
Bse3DI	GCAATG	1 cut(s)	742
BseBI	CCWGG	2 cut(s)	201, 896
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	742
BseMII	CTCAG	7 cut(s)	114, 394, 434, 530, 602, 686, 768
BseNI	ACTGG	7 cut(s)	45, 225, 353, 523, 600, 688, 908
BshFI	GGCC	2 cut(s)	522, 774
BsmAI	GTCTC	1 cut(s)	852
BsnI	GGCC	2 cut(s)	522, 774
Bso31I	GGTCTC	1 cut(s)	852
Bsp119I	TTCGAA	1 cut(s)	842
Bsp143I	GATC	4 cut(s)	564, 607, 742, 927
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	522, 774
BspCNI	CTCAG	7 cut(s)	115, 393, 435, 531, 603, 687, 769
BspLI	GGNNCC	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	591
BspMI	ACCTGC	1 cut(s)	793
BspPI	GGATC	2 cut(s)	559, 615
BspQI	GCTCTTC	1 cut(s)	854
BspT104I	TTCGAA	1 cut(s)	842
BspTNI	GGTCTC	1 cut(s)	852
BsrDI	GCAATG	1 cut(s)	742
BsrI	ACTGG	7 cut(s)	45, 225, 353, 523, 600, 688, 908
BssMI	GATC	4 cut(s)	564, 607, 742, 927
Bst2UI	CCWGG	2 cut(s)	201, 896
Bst4CI	ACNGT	3 cut(s)	157, 459, 548
Bst6I	CTCTTC	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	4 cut(s)	567, 610, 745, 930
BstMAI	GTCTC	1 cut(s)	852
BstMBI	GATC	4 cut(s)	564, 607, 742, 927
BstNI	CCWGG	2 cut(s)	201, 896
BstSCI	CCNGG	2 cut(s)	199, 894
BstSFI	CTRYAG	1 cut(s)	587
BstX2I	RGATCY	2 cut(s)	564, 607
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstYI	RGATCY	2 cut(s)	564, 607
BsuRI	GGCC	2 cut(s)	522, 774
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	4 cut(s)	38, 153, 360, 584
BveI	ACCTGC	1 cut(s)	793
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	595
Cfr13I	GGNCC	3 cut(s)	178, 416, 773
Csp6I	GTAC	4 cut(s)	36, 276, 707, 751
CviAII	CATG	3 cut(s)	398, 514, 765
CviJI	RGCY	8 cut(s)	109, 175, 361, 409, 522, 654, 774, 847
CviKI_1	RGCY	8 cut(s)	109, 175, 361, 409, 522, 654, 774, 847
CviQI	GTAC	4 cut(s)	36, 276, 707, 751
DpnI	GATC	4 cut(s)	566, 609, 744, 929
DpnII	GATC	4 cut(s)	564, 607, 742, 927
DraIII	CACNNNGTG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	852
Eco32I	GATATC	1 cut(s)	386
Eco47I	GGWCC	2 cut(s)	178, 416
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	2 cut(s)	199, 894
EcoRV	GATATC	1 cut(s)	386
FaeI	CATG	3 cut(s)	401, 517, 768
FaiI	YATR	9 cut(s)	399, 434, 476, 503, 515, 580, 725, 766, 876
FatI	CATG	3 cut(s)	397, 513, 764
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	110
FspBI	CTAG	3 cut(s)	389, 524, 818
GluI	GCNGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	522, 774
Hin1II	CATG	3 cut(s)	401, 517, 768
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	5 cut(s)	349, 669, 713, 821, 869
HpaI	GTTAAC	1 cut(s)	309
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	6 cut(s)	38, 197, 259, 309, 416, 707
Hpy188I	TCNGA	5 cut(s)	383, 612, 696, 808, 857
Hpy188III	TCNNGA	7 cut(s)	20, 184, 389, 442, 558, 794, 818
Hpy8I	GTNNAC	6 cut(s)	38, 197, 259, 309, 416, 707
Hpy99I	CGWCG	2 cut(s)	106, 170
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	3 cut(s)	157, 459, 548
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	304, 589
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	401, 517, 768
KspAI	GTTAAC	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	564, 607, 742, 927
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	2 cut(s)	106, 358
LweI	GCATC	2 cut(s)	4, 109
MaeI	CTAG	3 cut(s)	389, 524, 818
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	161, 548
MalI	GATC	4 cut(s)	566, 609, 744, 929
MboI	GATC	4 cut(s)	564, 607, 742, 927
MboII	GAAGA	3 cut(s)	35, 712, 841
MflI	RGATCY	2 cut(s)	564, 607
MluCI	AATT	6 cut(s)	27, 81, 262, 448, 530, 636
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	6 cut(s)	180, 191, 225, 456, 579, 877
MroXI	GAANNNNTTC	1 cut(s)	848
MseI	TTAA	4 cut(s)	135, 308, 618, 680
MslI	CAYNNNNRTG	1 cut(s)	402
MspR9I	CCNGG	2 cut(s)	201, 896
MvaI	CCWGG	2 cut(s)	201, 896
NdeII	GATC	4 cut(s)	564, 607, 742, 927
NlaIII	CATG	3 cut(s)	401, 517, 768
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	842
PciSI	GCTCTTC	1 cut(s)	854
PdmI	GAANNNNTTC	1 cut(s)	848
PfeI	GAWTC	4 cut(s)	349, 669, 821, 869
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	199, 894
PspGI	CCWGG	2 cut(s)	199, 894
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	3 cut(s)	178, 416, 773
PsrI	GAACNNNNNNTAC	2 cut(s)	44, 76
PstI	CTGCAG	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	564, 607
RsaI	GTAC	4 cut(s)	37, 277, 708, 752
RsaNI	GTAC	4 cut(s)	36, 276, 707, 751
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	4 cut(s)	135, 308, 618, 680
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	4 cut(s)	564, 607, 742, 927
Sau96I	GGNCC	3 cut(s)	178, 416, 773
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	201, 896
SfaNI	GCATC	2 cut(s)	4, 109
SfcI	CTRYAG	1 cut(s)	587
SfuI	TTCGAA	1 cut(s)	842
SinI	GGWCC	2 cut(s)	178, 416
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	6 cut(s)	27, 81, 262, 448, 530, 636
SsiI	CCGC	1 cut(s)	110
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	3 cut(s)	389, 524, 818
StyD4I	CCNGG	2 cut(s)	199, 894
TaaI	ACNGT	3 cut(s)	157, 459, 548
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	842
TasI	AATT	6 cut(s)	27, 81, 262, 448, 530, 636
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	4 cut(s)	349, 669, 821, 869
Tru1I	TTAA	4 cut(s)	135, 308, 618, 680
Tru9I	TTAA	4 cut(s)	135, 308, 618, 680
TscAI	CASTG	4 cut(s)	45, 160, 360, 591
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	712, 841
TspGWI	ACGGA	2 cut(s)	119, 149
TspRI	CASTG	4 cut(s)	45, 160, 360, 591
VpaK11BI	GGWCC	2 cut(s)	178, 416
XapI	RAATTY	1 cut(s)	636
XbaI	TCTAGA	2 cut(s)	388, 817
XmiI	GTMKAC	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	848
XspI	CTAG	3 cut(s)	389, 524, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.