Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7738557 .. 7744949

Gene Structure 6393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG089100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGAGCTAAGTATTGGAAGTTCAATGGCGGTTCTTGCCAAATTGAAATGGTTGGGGTAACCATGGAGCCGCCAAAGGAAGCTGAGAGTAGCGTTGACTGTGAATGCAACAACACTGTCTGTCACGTCGTAAAGCTAGGACTCAAGAGGTTTAGTCTACCGGGCACGCTTCCACCTCAACTGGTGAAACTTCCTTATCTTAGAGAAATTAGGATAAATGATAACAACTTCAATGGGGCTATACCTGATTTTATACAGAATTGGAAACAACTCGATAGATTAGAAATACATGGCAGTGGGCTTCATGGACCTATCCCATCAAACATATCTCTCCTGAGTAATTTAGTTGAGTTGAGGATTAGTGATATAAATGGAACAGAGCAGGATTTTCCTATGTTGAAAAACATGACTGGCCTAGTCAGATTGATTCTGAGAAACTGTAACATTTCTGGTGAGATCCCTCCTTACCTATGGACACTGCAGAACCTGGAAATGTTGGATGTAAGTTTTAACAAGTTGATAGGGAAAATTCCAACGACAATCAGCTTACAGCGTTTGAGATTCCTATTCTTAACTGGCAACTCTCTGAGTGGAAGTGTACCAGACTCAATCTTCAAAGATGGAAGCAATGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACATGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

233

Amino Acids

26.11

Weight (kDa)

5.45

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	138 - 178	8.5e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	157
AciI	CCGC	2 cut(s)	30, 71
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	528
AfaI	GTAC	2 cut(s)	600, 644
AgsI	TTSAA	5 cut(s)	25, 47, 232, 400, 616
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	4 cut(s)	8, 83, 136, 546
AluI	AGCT	4 cut(s)	8, 83, 136, 546
AlwI	GGATC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	487
AoxI	GGCC	2 cut(s)	412, 664
ApoI	RAATTY	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	308, 665
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	196, 464
AvaII	GGWCC	1 cut(s)	308
BaeGI	GKGCMC	1 cut(s)	167
BarI	GAAGNNNNNNTAC	2 cut(s)	635, 667
BccI	CCATC	2 cut(s)	325, 614
BciT130I	CCWGG	1 cut(s)	488
BcnI	CCSGG	1 cut(s)	162
BfaI	CTAG	2 cut(s)	137, 416
BfmI	CTRYAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	2 cut(s)	162, 488
Bme18I	GGWCC	1 cut(s)	308
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	308, 665
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	162, 488
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	3 cut(s)	186, 415, 580
Bse3DI	GCAATG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	505
BseMI	GCAATG	1 cut(s)	634
BseMII	CTCAG	5 cut(s)	75, 326, 422, 578, 660
BseNI	ACTGG	3 cut(s)	186, 415, 580
BseSI	GKGCMC	1 cut(s)	167
BshFI	GGCC	2 cut(s)	414, 666
BsiSI	CCGG	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	414, 666
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	456, 634
Bsp19I	CCATGG	1 cut(s)	63
BspACI	CCGC	2 cut(s)	30, 71
BspANI	GGCC	2 cut(s)	414, 666
BspCNI	CTCAG	5 cut(s)	76, 327, 423, 579, 661
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	685
BspPI	GGATC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	634
BsrI	ACTGG	3 cut(s)	186, 415, 580
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	456, 634
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	488
Bst4CI	ACNGT	3 cut(s)	101, 118, 440
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	7 cut(s)	9, 84, 200, 335, 431, 587, 669
BstDSI	CCRYGG	1 cut(s)	63
BstEII	GGTNACC	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	2 cut(s)	459, 637
BstMBI	GATC	2 cut(s)	456, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	488
BstPI	GGTNACC	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	160, 486
BstSFI	CTRYAG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
BsuRI	GGCC	2 cut(s)	414, 666
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	505
BtsI	GCAGTG	2 cut(s)	301, 476
BtsIMutI	CAGTG	3 cut(s)	114, 301, 476
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	167
CaiI	CAGNNNCTG	1 cut(s)	487
Cfr13I	GGNCC	2 cut(s)	308, 665
Csp6I	GTAC	2 cut(s)	599, 643
CviAII	CATG	6 cut(s)	64, 290, 305, 406, 657, 694
CviJI	RGCY	9 cut(s)	8, 70, 83, 136, 239, 301, 414, 546, 666
CviKI_1	RGCY	9 cut(s)	8, 70, 83, 136, 239, 301, 414, 546, 666
CviQI	GTAC	2 cut(s)	599, 643
DdeI	CTNAG	7 cut(s)	9, 84, 200, 335, 431, 587, 669
DpnI	GATC	2 cut(s)	458, 636
DpnII	GATC	2 cut(s)	456, 634
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	6 cut(s)	67, 293, 308, 409, 660, 697
FatI	CATG	6 cut(s)	63, 289, 304, 405, 656, 693
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	2 cut(s)	137, 416
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	414, 666
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	6 cut(s)	67, 293, 308, 409, 660, 697
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	4 cut(s)	141, 427, 561, 605
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	196, 464
Hpy166II	GTNNAC	3 cut(s)	97, 158, 599
Hpy188I	TCNGA	3 cut(s)	422, 432, 588
Hpy188III	TCNNGA	3 cut(s)	145, 334, 686
Hpy8I	GTNNAC	3 cut(s)	97, 158, 599
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	3 cut(s)	101, 118, 440
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	108, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	7 cut(s)	9, 84, 200, 335, 431, 587, 669
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	6 cut(s)	67, 293, 308, 409, 660, 697
Kzo9I	GATC	2 cut(s)	456, 634
LmnI	GCTCC	2 cut(s)	5, 67
MaeI	CTAG	2 cut(s)	137, 416
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	3 cut(s)	58, 122, 440
MalI	GATC	2 cut(s)	458, 636
MboI	GATC	2 cut(s)	456, 634
MboII	GAAGA	1 cut(s)	604
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	5 cut(s)	42, 207, 259, 340, 528
MlyI	GAGTC	2 cut(s)	135, 599
MmeI	TCCRAC	2 cut(s)	477, 557
MnlI	CCTC	4 cut(s)	141, 186, 348, 471
MseI	TTAA	2 cut(s)	510, 572
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	162, 488
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	63
NdeII	GATC	2 cut(s)	456, 634
NlaIII	CATG	6 cut(s)	67, 293, 308, 409, 660, 697
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	122
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	427, 561
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	2 cut(s)	135, 599
PpsI	GAGTC	2 cut(s)	135, 599
Psp6I	CCWGG	1 cut(s)	486
PspEI	GGTNACC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	308, 665
PsrI	GAACNNNNNNTAC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	487
PsuI	RGATCY	1 cut(s)	456
RsaI	GTAC	2 cut(s)	600, 644
RsaNI	GTAC	2 cut(s)	599, 643
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	510, 572
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	2 cut(s)	456, 634
Sau96I	GGNCC	2 cut(s)	308, 665
SchI	GAGTC	2 cut(s)	135, 599
ScrFI	CCNGG	2 cut(s)	162, 488
SduI	GDGCHC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	5 cut(s)	42, 207, 259, 340, 528
SsiI	CCGC	2 cut(s)	30, 71
SspMI	CTAG	2 cut(s)	137, 416
StyD4I	CCNGG	2 cut(s)	160, 486
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	101, 118, 440
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	273
TasI	AATT	5 cut(s)	42, 207, 259, 340, 528
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	427, 561
Tru1I	TTAA	2 cut(s)	510, 572
Tru9I	TTAA	2 cut(s)	510, 572
TscAI	CASTG	3 cut(s)	121, 301, 483
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	3 cut(s)	121, 301, 483
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	528
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	2 cut(s)	137, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.