Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8210670 .. 8213881

Gene Structure 3212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG102500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGCATAGAGCTTGATTACTCTTCTTACTGTCTTGCAATTTGTTGTGTAAATATATGCTCATCTCATTCTATACTGGTTTGTTATCTGATGCATGTATTACTTGAATACCTAAACCTTTTAGTTGATGCTCTCCAACAAATTGCTACCACGATTGGCGCAATATATTGGAAGTTTAATGGTGATGCTTGCCGGATTGAAATGGTTGGTCTAACAGAGAAGCCGCCAGAGGAATCTGAGAGCACAACTGAATGTGAATGCCACTTCGAGAACAACACAGTTTGTCATGTCGTCAGATTGGTGCTTTCCCCTATTGCGCTGACTGGAAAGCTGCCAAAGACATTTGCTCGGCTAACAAATTTGACAGATATACGTTTAAATGATAACAACCTCAATGGAACAATCCCCGATTGGGGGCAGAACTGGAAACAACTCAATAGATCGAGGATTAGTGACATGGATGGGCCTAATCAGGAATTTCCTTTGCTCATAAACATGACAGGAATAGTAAGATTCCTTCTAACAGGAAATCTGCTTAGTGGAAACCTGCCAGATTCACTCTTGCAAGATGGAAAGAATGTTGATGTGTCATACAACAACTTCACATCGCAAGGCCCTGAAAAAGGCGATTGTCAAGAACAAAAGTCAGAATACAATCTCACATTTTCTGTAGACACACAGAATGTCTATGTATGCATCTCCGACACTAGCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

238

Amino Acids

26.6

Weight (kDa)

4.59

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	358, 476
AfiI	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 623
AgsI	TTSAA	2 cut(s)	107, 200
AluBI	AGCT	2 cut(s)	13, 331
AluI	AGCT	2 cut(s)	13, 331
Alw21I	GWGCWC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	464, 613
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	358, 476
AspLEI	GCGC	3 cut(s)	161, 319, 713
AspS9I	GGNCC	2 cut(s)	464, 614
AsuHPI	GGTGA	1 cut(s)	194
BarI	GAAGNNNNNNTAC	2 cut(s)	501, 533
Bbv12I	GWGCWC	1 cut(s)	245
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	455, 563
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	714
BfuAI	ACCTGC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	224, 332
BlsI	GCNGC	2 cut(s)	225, 333
BmgT120I	GGNCC	2 cut(s)	464, 614
BmsI	GCATC	4 cut(s)	81, 118, 175, 705
Bsc4I	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 623
Bse1I	ACTGG	3 cut(s)	81, 328, 428
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 623
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	3 cut(s)	81, 328, 428
BseXI	GCAGC	1 cut(s)	318
BshFI	GGCC	2 cut(s)	466, 615
BsiHKAI	GWGCWC	1 cut(s)	245
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	4 cut(s)	412, 413, 414, 623
BsmI	GAATGC	1 cut(s)	263
BsnI	GGCC	2 cut(s)	466, 615
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	466, 615
BspCNI	CTCAG	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	555
BsrI	ACTGG	3 cut(s)	81, 328, 428
BssMI	GATC	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	32, 280
Bst6I	CTCTTC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	237, 536
BstENI	CCTNNNNNAGG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	714
BstHHI	GCGC	3 cut(s)	161, 319, 713
BstKTI	GATC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	669
BstV1I	GCAGC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	466, 615
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	466
BveI	ACCTGC	1 cut(s)	555
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	3 cut(s)	161, 319, 713
Cfr13I	GGNCC	2 cut(s)	464, 614
CviAII	CATG	4 cut(s)	95, 287, 457, 496
CviJI	RGCY	6 cut(s)	13, 223, 331, 352, 466, 615
CviKI_1	RGCY	6 cut(s)	13, 223, 331, 352, 466, 615
DdeI	CTNAG	2 cut(s)	237, 536
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	614
EcoT22I	ATGCAT	2 cut(s)	96, 698
FaeI	CATG	4 cut(s)	98, 290, 460, 499
FatI	CATG	4 cut(s)	94, 286, 456, 495
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	224, 332
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	224, 332
FspBI	CTAG	1 cut(s)	708
GlaI	GCGC	3 cut(s)	160, 318, 712
GluI	GCNGC	2 cut(s)	224, 332
HaeII	RGCGCY	1 cut(s)	714
HaeIII	GGCC	2 cut(s)	466, 615
HapII	CCGG	1 cut(s)	193
HhaI	GCGC	3 cut(s)	161, 319, 713
Hin1II	CATG	4 cut(s)	98, 290, 460, 499
Hin6I	GCGC	3 cut(s)	159, 317, 711
HinP1I	GCGC	3 cut(s)	159, 317, 711
HinfI	GANTC	3 cut(s)	233, 513, 554
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	673
Hpy188I	TCNGA	5 cut(s)	90, 238, 296, 649, 703
Hpy188III	TCNNGA	3 cut(s)	268, 473, 635
Hpy8I	GTNNAC	1 cut(s)	673
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	32, 280
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	4 cut(s)	38, 94, 565, 696
HpyF3I	CTNAG	2 cut(s)	237, 536
HpySE526I	ACGT	1 cut(s)	373
Hsp92II	CATG	4 cut(s)	98, 290, 460, 499
HspAI	GCGC	3 cut(s)	159, 317, 711
Kzo9I	GATC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	4 cut(s)	81, 118, 175, 705
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	4 cut(s)	39, 141, 358, 476
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	223, 401, 438
Mph1103I	ATGCAT	2 cut(s)	96, 698
MseI	TTAA	2 cut(s)	177, 377
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	4 cut(s)	98, 290, 460, 499
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	2 cut(s)	96, 698
NspI	RCATGY	1 cut(s)	98
PctI	GAATGC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	233, 513, 554
PkrI	GCNGC	2 cut(s)	225, 333
PspPI	GGNCC	2 cut(s)	464, 614
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	177, 377
SatI	GCNGC	2 cut(s)	224, 332
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	2 cut(s)	464, 614
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	7 cut(s)	15, 114, 120, 333, 376, 393, 549
SfaNI	GCATC	4 cut(s)	81, 118, 175, 705
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	494
Sse9I	AATT	4 cut(s)	39, 141, 358, 476
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	708
TaaI	ACNGT	2 cut(s)	32, 280
TaiI	ACGT	1 cut(s)	376
TaqI	TCGA	2 cut(s)	267, 443
TasI	AATT	4 cut(s)	39, 141, 358, 476
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	3 cut(s)	233, 513, 554
Tru1I	TTAA	2 cut(s)	177, 377
Tru9I	TTAA	2 cut(s)	177, 377
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	452
XagI	CCTNNNNNAGG	1 cut(s)	621
XapI	RAATTY	2 cut(s)	358, 476
XceI	RCATGY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	1 cut(s)	708
Zsp2I	ATGCAT	2 cut(s)	96, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.