Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8434693 .. 8450628

Gene Structure 15936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG093300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTTTTCACCTTAATCTATTGGAGAGGCCTCAAGAGGTTTAGTCTACCTGGCACACTTCCACCTCAACTGGCGAAACTACCTTACCTTAGAGAAATTGATTTGGTTTACAATTATCTTACTGGTACAATACCAGCAGAATGGGGTTCAATGCAGTTAACTTCAATCTTTCTTCTTGTAAATCGCTTATCAGGGGAGATTCCAGTGGAGCTGGCAAATATTACCACTCTCAGATACCTGATATTGTCCTCCAATTATTTGACTGGAAATATACCAAAGACATTCGCTGGGCTAAGAAATCTAACAGACCTTCGGATAAATGATAACAGCTTCAATGGGACTATACCTGATTTTATACAGAATTGGAAACAACTCAATAGATTGAGGATTAGTGATTTAAATGGAATAGAGCAGGATTTTCCTATGTTGGAAAACATGCCTGGCCTAGTCAGATTGATTCTGAGAAACTGTAACATTTCTGGAGAGATCCCTCCTTACCTATGGACCCTGCAGAAACTGGAAATGCTGGATCTGAGTTTTAACAAGTTGATAGGAGAAATTCCAACCACAATCAGCTTAAAGCGTTTGAGATTCCTATTCTTAATTGGCAACTCCTTGAGTGGAAGTGTACCAGACTCAATCTTCATAGATGGAAGCAACGTTGATCTTTCGTACAATAACTTCACATGGCAAGGCCCTGAGCAACCTGCTTGTCAGGAGAACAAGTCAGAATACTCTCTAGAATCCTATGGTGGAGAGGCAACTTGCCAGGAAAACTGGGCAGACAGAAAGGTCGAGACACTCAGATCAAAATGGACTGGCCAACAAGGCGCTTGTCATTTGCAACAATCTGGAAAGTTGTTGGAGCTAGTCGATGAGAAGTTAGGGTCCGAGTTTGACAAAAAGGAAGCAGAGATCATGGTCAAAGTAGCTCTGATATGCACAAACGCCTCTGCTTCACTTAGGCCTATCATGTCTGAGGTGGTCAAAATGCTTGAAGGACAAATAGCCGTTCCGGACGTGATCCCTGAACCGAGTAGCTACAGGGAGGATTTGAGGTTTAAGGCCATGAGAGACCTCCATCGGCAGAGGGAAACTGATAGTTCAACTATGAGCCAAACACAAATGACAGTCCAAACATTCTGCTCCACCTCTAGCACATCTGGCATTGACTCCTGTGAAATCAACCCAGAATCCGTACCCCCTTCCGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

405

Amino Acids

45.73

Weight (kDa)

5.14

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	76 - 132	4.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	1015
AclI	AACGTT	1 cut(s)	660
AclWI	GGATC	3 cut(s)	481, 537, 1018
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	558
AfaI	GTAC	4 cut(s)	127, 630, 674, 1200
AgsI	TTSAA	5 cut(s)	150, 165, 334, 998, 1107
AjiI	CACGTC	1 cut(s)	1021
AjnI	CCWGG	3 cut(s)	49, 439, 768
AluBI	AGCT	6 cut(s)	211, 330, 576, 868, 932, 1041
AluI	AGCT	6 cut(s)	211, 330, 576, 868, 932, 1041
Alw26I	GTCTC	2 cut(s)	791, 1068
AlwI	GGATC	3 cut(s)	481, 537, 1018
AlwNI	CAGNNNCTG	1 cut(s)	517
Aor13HI	TCCGGA	1 cut(s)	1015
AoxI	GGCC	6 cut(s)	28, 442, 694, 820, 965, 1065
ApoI	RAATTY	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	833
AspS9I	GGNCC	3 cut(s)	504, 695, 888
AvaII	GGWCC	2 cut(s)	504, 888
BalI	TGGCCA	1 cut(s)	822
BarI	GAAGNNNNNNTAC	2 cut(s)	665, 697
BccI	CCATC	2 cut(s)	644, 1089
BceAI	ACGGC	1 cut(s)	995
BciT130I	CCWGG	3 cut(s)	51, 441, 770
BcoDI	GTCTC	2 cut(s)	791, 1068
BfaI	CTAG	4 cut(s)	446, 740, 869, 1155
BfmI	CTRYAG	2 cut(s)	509, 1042
BfoI	RGCGCY	1 cut(s)	834
BfuAI	ACCTGC	1 cut(s)	715
BglI	GCCNNNNNGGC	1 cut(s)	828
Bme1390I	CCNGG	3 cut(s)	51, 441, 770
Bme18I	GGWCC	2 cut(s)	504, 888
BmgBI	CACGTC	1 cut(s)	1021
BmgT120I	GGNCC	3 cut(s)	504, 695, 888
BmiI	GGNNCC	2 cut(s)	506, 889
BmrFI	CCNGG	3 cut(s)	51, 441, 770
BmrI	ACTGGG	1 cut(s)	787
BmuI	ACTGGG	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	17, 637
BsaI	GGTCTC	1 cut(s)	1068
BsaWI	WCCGGW	1 cut(s)	1015
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bse1I	ACTGG	7 cut(s)	75, 127, 203, 268, 522, 782, 823
BseAI	TCCGGA	1 cut(s)	1015
BseBI	CCWGG	3 cut(s)	51, 441, 770
BseMII	CTCAG	6 cut(s)	244, 452, 524, 690, 817, 969
BseNI	ACTGG	7 cut(s)	75, 127, 203, 268, 522, 782, 823
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	6 cut(s)	30, 444, 696, 822, 967, 1067
BsiSI	CCGG	1 cut(s)	1016
BslFI	GGGAC	1 cut(s)	352
BsmAI	GTCTC	2 cut(s)	791, 1068
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	6 cut(s)	30, 444, 696, 822, 967, 1067
Bso31I	GGTCTC	1 cut(s)	1068
Bsp13I	TCCGGA	1 cut(s)	1015
Bsp143I	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
BspANI	GGCC	6 cut(s)	30, 444, 696, 822, 967, 1067
BspCNI	CTCAG	6 cut(s)	243, 453, 525, 691, 816, 970
BspEI	TCCGGA	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	506, 889
BspMAI	CTGCAG	1 cut(s)	513
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	3 cut(s)	481, 537, 1018
BspTNI	GGTCTC	1 cut(s)	1068
BsrI	ACTGG	7 cut(s)	75, 127, 203, 268, 522, 782, 823
BssMI	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
Bst2UI	CCWGG	3 cut(s)	51, 441, 770
Bst4CI	ACNGT	2 cut(s)	470, 1132
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	9 cut(s)	89, 230, 293, 461, 533, 699, 803, 962, 978
BstH2I	RGCGCY	1 cut(s)	834
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	6 cut(s)	489, 532, 667, 809, 918, 1026
BstMAI	GTCTC	2 cut(s)	791, 1068
BstMBI	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
BstMWI	GCNNNNNNNGC	2 cut(s)	828, 1164
BstNI	CCWGG	3 cut(s)	51, 441, 770
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	3 cut(s)	49, 439, 768
BstSFI	CTRYAG	2 cut(s)	509, 1042
BstX2I	RGATCY	2 cut(s)	486, 529
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	2 cut(s)	486, 529
BsuRI	GGCC	6 cut(s)	30, 444, 696, 822, 967, 1067
BtrI	CACGTC	1 cut(s)	1021
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	1 cut(s)	833
Cfr13I	GGNCC	3 cut(s)	504, 695, 888
Csp6I	GTAC	4 cut(s)	126, 629, 673, 1199
CviAII	CATG	5 cut(s)	436, 687, 919, 973, 1069
CviQI	GTAC	4 cut(s)	126, 629, 673, 1199
DdeI	CTNAG	9 cut(s)	89, 230, 293, 461, 533, 699, 803, 962, 978
DpnI	GATC	6 cut(s)	488, 531, 666, 808, 917, 1025
DpnII	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
DraI	TTTAAA	1 cut(s)	399
DrdI	GACNNNNNNGTC	1 cut(s)	791
DseDI	GACNNNNNNGTC	1 cut(s)	791
EaeI	YGGCCR	1 cut(s)	820
Eco147I	AGGCCT	2 cut(s)	30, 967
Eco31I	GGTCTC	1 cut(s)	1068
Eco47I	GGWCC	2 cut(s)	504, 888
EcoO109I	RGGNCCY	1 cut(s)	695
EcoRII	CCWGG	3 cut(s)	49, 439, 768
FaeI	CATG	5 cut(s)	439, 690, 922, 976, 1072
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	5 cut(s)	435, 686, 918, 972, 1068
FblI	GTMKAC	1 cut(s)	46
FspBI	CTAG	4 cut(s)	446, 740, 869, 1155
GlaI	GCGC	1 cut(s)	832
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	834
HaeIII	GGCC	6 cut(s)	30, 444, 696, 822, 967, 1067
HapII	CCGG	1 cut(s)	1016
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	5 cut(s)	439, 690, 922, 976, 1072
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HinfI	GANTC	7 cut(s)	199, 457, 591, 635, 743, 1172, 1193
HpaI	GTTAAC	1 cut(s)	159
HpaII	CCGG	1 cut(s)	1016
Hpy166II	GTNNAC	4 cut(s)	47, 109, 159, 629
Hpy188III	TCNNGA	7 cut(s)	34, 480, 716, 740, 796, 852, 1016
Hpy8I	GTNNAC	4 cut(s)	47, 109, 159, 629
HpyAV	CCTTC	3 cut(s)	320, 992, 1215
HpyCH4III	ACNGT	2 cut(s)	470, 1132
HpyCH4IV	ACGT	2 cut(s)	660, 1020
HpyCH4V	TGCA	4 cut(s)	154, 511, 844, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	828, 1164
HpyF3I	CTNAG	9 cut(s)	89, 230, 293, 461, 533, 699, 803, 962, 978
HpySE526I	ACGT	2 cut(s)	660, 1020
Hsp92II	CATG	5 cut(s)	439, 690, 922, 976, 1072
HspAI	GCGC	1 cut(s)	831
Kpn2I	TCCGGA	1 cut(s)	1015
KspAI	GTTAAC	1 cut(s)	159
Kzo9I	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
LmnI	GCTCC	3 cut(s)	208, 865, 1151
MaeI	CTAG	4 cut(s)	446, 740, 869, 1155
MaeII	ACGT	2 cut(s)	660, 1020
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	6 cut(s)	488, 531, 666, 808, 917, 1025
MboI	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
MboII	GAAGA	2 cut(s)	164, 634
MflI	RGATCY	2 cut(s)	486, 529
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	6 cut(s)	96, 112, 253, 361, 558, 603
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	2 cut(s)	629, 1166
MmeI	TCCRAC	3 cut(s)	408, 587, 843
Mox20I	TGGCCA	1 cut(s)	822
MroI	TCCGGA	1 cut(s)	1015
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	7 cut(s)	14, 158, 398, 540, 578, 602, 1062
Msp20I	TGGCCA	1 cut(s)	822
MspI	CCGG	1 cut(s)	1016
MspR9I	CCNGG	3 cut(s)	51, 441, 770
MvaI	CCWGG	3 cut(s)	51, 441, 770
MwoI	GCNNNNNNNGC	2 cut(s)	828, 1164
NdeII	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
NlaIII	CATG	5 cut(s)	439, 690, 922, 976, 1072
NlaIV	GGNNCC	2 cut(s)	506, 889
NspI	RCATGY	1 cut(s)	439
PceI	AGGCCT	2 cut(s)	30, 967
PfeI	GAWTC	5 cut(s)	199, 457, 591, 743, 1193
PleI	GAGTC	2 cut(s)	629, 1166
PpsI	GAGTC	2 cut(s)	629, 1166
Psp1406I	AACGTT	1 cut(s)	660
Psp6I	CCWGG	3 cut(s)	49, 439, 768
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	3 cut(s)	49, 439, 768
PspN4I	GGNNCC	2 cut(s)	506, 889
PspPI	GGNCC	3 cut(s)	504, 695, 888
PstI	CTGCAG	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	486, 529
RsaI	GTAC	4 cut(s)	127, 630, 674, 1200
RsaNI	GTAC	4 cut(s)	126, 629, 673, 1199
SaqAI	TTAA	7 cut(s)	14, 158, 398, 540, 578, 602, 1062
Sau3AI	GATC	6 cut(s)	486, 529, 664, 806, 915, 1023
Sau96I	GGNCC	3 cut(s)	504, 695, 888
SchI	GAGTC	2 cut(s)	629, 1166
ScrFI	CCNGG	3 cut(s)	51, 441, 770
SfcI	CTRYAG	2 cut(s)	509, 1042
SinI	GGWCC	2 cut(s)	504, 888
SmiI	ATTTAAAT	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	32, 616
SmoI	CTYRAG	2 cut(s)	32, 616
Sse9I	AATT	6 cut(s)	96, 112, 253, 361, 558, 603
SseBI	AGGCCT	2 cut(s)	30, 967
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	4 cut(s)	446, 740, 869, 1155
StuI	AGGCCT	2 cut(s)	30, 967
StyD4I	CCNGG	3 cut(s)	49, 439, 768
SwaI	ATTTAAAT	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	470, 1132
TaiI	ACGT	2 cut(s)	663, 1023
TaqI	TCGA	2 cut(s)	795, 873
TasI	AATT	6 cut(s)	96, 112, 253, 361, 558, 603
TfiI	GAWTC	5 cut(s)	199, 457, 591, 743, 1193
Tru1I	TTAA	7 cut(s)	14, 158, 398, 540, 578, 602, 1062
Tru9I	TTAA	7 cut(s)	14, 158, 398, 540, 578, 602, 1062
TscAI	CASTG	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	634
TspGWI	ACGGA	1 cut(s)	1186
TspRI	CASTG	1 cut(s)	210
VpaK11BI	GGWCC	2 cut(s)	504, 888
XapI	RAATTY	1 cut(s)	558
XbaI	TCTAGA	1 cut(s)	739
XceI	RCATGY	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	4 cut(s)	446, 740, 869, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.