Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

8433471 .. 8434605

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGTTTCCGACTTTCCCCAACCAGTTCAGACTTTGCTTGCCAAAGCATTTTACTGTTTATGGATGTTTACATTGTCTGACAAGTACATTGTAACCAGTCTTGCACTACTTCTTTCACTAGTACTACTGCCCAAAAGCTTCAATCTTTATTCTCCAGTCTTCATCATCATGCTACCCAGAAGCAAAAGCCGCTTGCTTTTTATATTGCTCACTTTGTTAAGCTGCTTATTCAGCTTGGTGAGATCTCAGACTCAGCAAGTTCCTCAAGATGAAATTGATGCTCTGGAAGAAATTACTCGTACACTGGGTGCTAAGTATTGGAAATTTAATGGTGGTTCTTGCCAAATTGAAATGGTTGGGGTAACTAAGGAGCCGCCAAAGGATGCTGAGAGTAGCATTGAATGTCAATGCAACAGCACTGTCTGTCATGTCGTAAAGCTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

148

Amino Acids

16.69

Weight (kDa)

7.52

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	190, 374
AcsI	RAATTY	1 cut(s)	323
AdeI	CACNNNGTG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	86, 123, 301
AgsI	TTSAA	3 cut(s)	142, 350, 401
AhlI	ACTAGT	1 cut(s)	118
AluBI	AGCT	4 cut(s)	138, 222, 234, 439
AluI	AGCT	4 cut(s)	138, 222, 234, 439
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	209
BcuI	ACTAGT	1 cut(s)	118
BfaI	CTAG	2 cut(s)	119, 445
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	3 cut(s)	190, 223, 374
BlsI	GCNGC	3 cut(s)	191, 224, 375
BmcAI	AGTACT	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	2 cut(s)	268, 373
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	249
Bse1I	ACTGG	4 cut(s)	23, 96, 155, 309
BseGI	GGATG	2 cut(s)	69, 388
BseMII	CTCAG	3 cut(s)	260, 266, 378
BseNI	ACTGG	4 cut(s)	23, 96, 155, 309
BseXI	GCAGC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	242
BspACI	CCGC	2 cut(s)	190, 374
BspCNI	CTCAG	3 cut(s)	259, 265, 379
BspLI	GGNNCC	1 cut(s)	372
BsrI	ACTGG	4 cut(s)	23, 96, 155, 309
BssMI	GATC	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	56, 421
BstC8I	GCNNGC	2 cut(s)	39, 194
BstDEI	CTNAG	5 cut(s)	246, 252, 312, 366, 387
BstF5I	GGATG	2 cut(s)	69, 388
BstKTI	GATC	1 cut(s)	245
BstMBI	GATC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 231
BstV1I	GCAGC	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	69, 388
BtsIMutI	CAGTG	2 cut(s)	302, 417
Cac8I	GCNNGC	2 cut(s)	39, 194
Csp6I	GTAC	3 cut(s)	85, 122, 300
CviAII	CATG	2 cut(s)	169, 428
CviJI	RGCY	6 cut(s)	138, 189, 222, 234, 373, 439
CviKI_1	RGCY	6 cut(s)	138, 189, 222, 234, 373, 439
CviQI	GTAC	3 cut(s)	85, 122, 300
DdeI	CTNAG	5 cut(s)	246, 252, 312, 366, 387
DpnI	GATC	1 cut(s)	244
DpnII	GATC	1 cut(s)	242
DraIII	CACNNNGTG	1 cut(s)	308
FaeI	CATG	2 cut(s)	172, 431
FaiI	YATR	4 cut(s)	61, 170, 203, 429
FatI	CATG	2 cut(s)	168, 427
Fnu4HI	GCNGC	3 cut(s)	190, 223, 374
FokI	GGATG	2 cut(s)	76, 395
Fsp4HI	GCNGC	3 cut(s)	190, 223, 374
FspBI	CTAG	2 cut(s)	119, 445
GluI	GCNGC	3 cut(s)	190, 223, 374
GsuI	CTGGAG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	172, 431
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	69, 302
Hpy188I	TCNGA	4 cut(s)	10, 30, 79, 249
Hpy188III	TCNNGA	2 cut(s)	266, 284
Hpy8I	GTNNAC	2 cut(s)	69, 302
HpyCH4III	ACNGT	2 cut(s)	56, 421
HpyCH4V	TGCA	2 cut(s)	104, 411
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 231
HpyF3I	CTNAG	5 cut(s)	246, 252, 312, 366, 387
Hsp92II	CATG	2 cut(s)	172, 431
Kzo9I	GATC	1 cut(s)	242
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	6 cut(s)	36, 109, 168, 190, 269, 290
Lsp1109I	GCAGC	1 cut(s)	209
LweI	GCATC	2 cut(s)	268, 373
MaeI	CTAG	2 cut(s)	119, 445
MaeIII	GTNAC	2 cut(s)	91, 361
MalI	GATC	1 cut(s)	244
MboI	GATC	1 cut(s)	242
MboII	GAAGA	2 cut(s)	151, 299
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	4 cut(s)	273, 291, 323, 345
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	273
MseI	TTAA	2 cut(s)	218, 327
MslI	CAYNNNNRTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	189, 231
NdeII	GATC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	172, 431
NlaIV	GGNNCC	1 cut(s)	372
PkrI	GCNGC	3 cut(s)	191, 224, 375
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	3 cut(s)	86, 123, 301
RsaNI	GTAC	3 cut(s)	85, 122, 300
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	218, 327
SatI	GCNGC	3 cut(s)	190, 223, 374
Sau3AI	GATC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	123
SchI	GAGTC	1 cut(s)	244
SetI	ASST	4 cut(s)	140, 224, 236, 441
SfaNI	GCATC	2 cut(s)	268, 373
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	118
Sse9I	AATT	4 cut(s)	273, 291, 323, 345
SsiI	CCGC	2 cut(s)	190, 374
SspMI	CTAG	2 cut(s)	119, 445
TaaI	ACNGT	2 cut(s)	56, 421
TasI	AATT	4 cut(s)	273, 291, 323, 345
TatI	WGTACW	2 cut(s)	84, 121
TauI	GCSGC	2 cut(s)	192, 376
Tru1I	TTAA	2 cut(s)	218, 327
Tru9I	TTAA	2 cut(s)	218, 327
TscAI	CASTG	2 cut(s)	309, 424
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	151, 285
TspRI	CASTG	2 cut(s)	309, 424
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	2 cut(s)	119, 445
ZrmI	AGTACT	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.