Rh5BG088900

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
7716293 .. 7719759
3467 bp
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UTR
Exon/CDS
Intron
Rh5BG088900.1

Sequence Viewer

Length: 639 bp
ATGAGCATAGAGCTTGATTGCTCTTCTTACTGTCTTGCAATTTATTGTGTAAATATATGCTCATCTCATTCTATATTGGCTTGTTATCTGATGCATGCATTACTTGAATATCTATACCTTTTACTTGATGCTGTCCAACAAATTGCTACCACGATGGGCGCAATATATTGGAAGTTTAATGGTGATGCTTGCCGGATTGAAATGGTTGGTCTAACAGAGAAGCCGCCAGAGGAATCTGAGAGCACAACTGAATGTGAATGCCACTTCGAGAACAACATAGTTTGTCATGTCGTCAGATTAGTGCTCAAGCGTCATAGTTTACCTGGTTTGCTTCCACCTGAACTAGTCAAGCTCCCTTACCTCCGAGAAATTGATTTTACTTACAACTATCTCAATGGTACGATACGGAAGGAATGGACTTCAATGAAATTAACTTCTATATCTATTCTTGTTAATCGCTTATCGGGGAAAATTCCAAAGGAGTTGGGAAATATAACTACTCTCAAGTACCTCCAACCAGTAGCTGCATCTACCCTTCTATATGCAGTGATGTGTCATACAACAACTTCACATCGCAAGGCCCTGAAAAACGCGATTGTCAAGAACAAAAGTCAGAATACAATCTCACATTTTCTGTAG

Protein Analysis

212

Amino Acids

24.01

Weight (kDa)

8.01

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 593
AciI CCGC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 471
AfaI GTAC 2 cut(s) 400, 509
AgsI TTSAA 3 cut(s) 107, 200, 423
AhlI ACTAGT 1 cut(s) 343
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 13, 352, 524
AluI AGCT 3 cut(s) 13, 352, 524
Alw21I GWGCWC 2 cut(s) 245, 306
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 1 cut(s) 579
ApeKI GCWGC 1 cut(s) 524
ApoI RAATTY 1 cut(s) 471
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 1 cut(s) 194
Bbv12I GWGCWC 2 cut(s) 245, 306
BbvI GCAGC 1 cut(s) 511
BccI CCATC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 324
BcuI ACTAGT 1 cut(s) 343
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 1 cut(s) 635
BisI GCNGC 2 cut(s) 224, 525
BlsI GCNGC 2 cut(s) 225, 526
Bme1390I CCNGG 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 580
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 4 cut(s) 81, 118, 175, 536
BpuEI CTTGAG 2 cut(s) 290, 488
Bse1I ACTGG 1 cut(s) 518
BseBI CCWGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 518
BseXI GCAGC 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 1 cut(s) 581
BsiHKAI GWGCWC 2 cut(s) 245, 306
BsiSI CCGG 1 cut(s) 193
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 581
Bsp1286I GDGCHC 2 cut(s) 245, 306
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 96, 190
BstDEI CTNAG 1 cut(s) 237
BstFNI CGCG 1 cut(s) 593
BstHHI GCGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 635
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 581
BtgZI GCGATG 1 cut(s) 557
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 2 cut(s) 96, 190
CaiI CAGNNNCTG 1 cut(s) 524
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 580
CseI GACGC 1 cut(s) 299
CsiI ACCWGGT 1 cut(s) 322
Csp6I GTAC 2 cut(s) 399, 508
CviAII CATG 2 cut(s) 95, 287
CviJI RGCY 6 cut(s) 13, 80, 223, 352, 524, 581
CviKI_1 RGCY 6 cut(s) 13, 80, 223, 352, 524, 581
CviQI GTAC 2 cut(s) 399, 508
DdeI CTNAG 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 322
EcoT22I ATGCAT 2 cut(s) 96, 100
FaeI CATG 2 cut(s) 98, 290
FatI CATG 2 cut(s) 94, 286
Fnu4HI GCNGC 2 cut(s) 224, 525
Fsp4HI GCNGC 2 cut(s) 224, 525
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 160
GluI GCNGC 2 cut(s) 224, 525
HaeIII GGCC 1 cut(s) 581
HapII CCGG 1 cut(s) 193
HgaI GACGC 1 cut(s) 299
HhaI GCGC 1 cut(s) 161
Hin1II CATG 2 cut(s) 98, 290
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 193
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 5 cut(s) 90, 238, 296, 365, 615
Hpy188III TCNNGA 2 cut(s) 268, 601
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 403, 545
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 5 cut(s) 38, 94, 98, 527, 545
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 98, 290
HspAI GCGC 1 cut(s) 159
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 357
LpnPI CCDG 7 cut(s) 206, 240, 309, 336, 351, 531, 596
Lsp1109I GCAGC 1 cut(s) 511
LweI GCATC 4 cut(s) 81, 118, 175, 536
MabI ACCWGGT 1 cut(s) 322
MaeI CTAG 1 cut(s) 344
MboII GAAGA 1 cut(s) 15
MhlI GDGCHC 2 cut(s) 245, 306
MluCI AATT 5 cut(s) 39, 141, 369, 428, 471
MmeI TCCRAC 2 cut(s) 160, 538
MnlI CCTC 3 cut(s) 223, 371, 521
Mph1103I ATGCAT 2 cut(s) 96, 100
MseI TTAA 3 cut(s) 177, 431, 453
MspI CCGG 1 cut(s) 193
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 593
NlaIII CATG 2 cut(s) 98, 290
NsiI ATGCAT 2 cut(s) 96, 100
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 28
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 225, 526
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspPI GGNCC 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 524
RsaI GTAC 2 cut(s) 400, 509
RsaNI GTAC 2 cut(s) 399, 508
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 3 cut(s) 177, 431, 453
SatI GCNGC 2 cut(s) 224, 525
Sau96I GGNCC 1 cut(s) 580
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 245, 306
SetI ASST 8 cut(s) 15, 120, 325, 340, 354, 363, 513, 526
SexAI ACCWGGT 1 cut(s) 322
SfaNI GCATC 4 cut(s) 81, 118, 175, 536
SfcI CTRYAG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 305, 503
SmoI CTYRAG 2 cut(s) 305, 503
SpeI ACTAGT 1 cut(s) 343
SphI GCATGC 1 cut(s) 98
Sse9I AATT 5 cut(s) 39, 141, 369, 428, 471
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 1 cut(s) 267
TasI AATT 5 cut(s) 39, 141, 369, 428, 471
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 177, 431, 453
Tru9I TTAA 3 cut(s) 177, 431, 453
TscAI CASTG 1 cut(s) 552
TseI GCWGC 1 cut(s) 524
TspDTI ATGAA 1 cut(s) 440
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 1 cut(s) 552
XapI RAATTY 1 cut(s) 471
XceI RCATGY 1 cut(s) 98
XspI CTAG 1 cut(s) 344
Zsp2I ATGCAT 2 cut(s) 96, 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.