Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002562

Physical Location & Seq

Genomic Coordinates Forward (+)

7723819 .. 7727169

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG089000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGTGGCTGTTAACCACGTTCTTTGCTTCATTATTGCATTGATCTGCTTCAAGCTACTGGGACTTGCTGAATCTAAGGTGCCTCAAGAGGAAGTTGATGCTCTTCAAGAAATTATGACCAAAATGGGGGCAGTGTATTGGAAGTTTAATGATGATACTTGCTGGATTGAAGTGGTTGGTCTAACAGAGTCACCACCAAAGGGATCTGAGCGCAGAATTGATTGTGAATGCCACTTCAAGAACAACACTGAATGTCATGTCATAAGATTAATGATCAAAGGTTATAGTTTGCCTGGTTTGCTTCCACCTGAACTAATCAAGCTGCCTTACCTCCAGGAAATATCTGTTTTTGTTAATCATCTATCCGGGGAAATTCCGAAGGAGTTGGGAAATATGAGAACTCTCACATACTTCCGTTTAAGTGACAACAACTTTAATGAAACAATCCCGGACTGGGTGCAGAATTGGAAACAACTCAACAGACTGGAAATGCATTCAAGTGGAATGGCCGGACCCATTCCATCAAATATTTCTGTTTTGACCAACTTGCATGACTTGAGGATTAGTGACATGGATGGGCCAAATCAGGAATTTCCTTTGCTGAGAAATATGACTGGAGTAGTAAGATTGATTTTGAGGAACTGTAACATTTTCGGAGAGATCCCCACATATATCTGGTCCATGAAGAATCTGGAAATGTTGGATCTCAGTTTCAACAAGTTAGCAGGTGAACTTTCATCCACTGCAGGCATTACTGAGCGCCTGAAATTTGAATCTAAGTCTAAACTTGTTTCGAAGCTCCTCAAAGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

271

Amino Acids

30.83

Weight (kDa)

5.93

Isoelectric Point (pI)

43.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162 AT4G16162
malus_domestica	MD03G1181300.v1.1
prunus_persica	Prupe.4G069000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0419351 RchiOBHm_Chr5g0014351 RchiOBHm_Chr5g0029821 RchiOBHm_Chr5g0029931
rosa_multiflora	Rmu_co8231443.1_g000001 Rmu_sc0002519.1_g000008 Rmu_sc0018966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00064520
rosa_rugosa	Rorug01G0052800 Rorug01G0114800 Rorug01G0218700 Rorug05G0017500 Rorug05G0184900 Rorug05G0325100
rosa_samantha	Rh1BG053300 Rh5AG092800 Rh5AG093000 Rh5AG093200 Rh5AG093300 Rh5BG088800 Rh5BG088900 Rh5BG089000 Rh5BG089100 Rh5BG089300 Rh5CG102500 Rh5CG102600 Rh5CG102900 Rh5CG103000 Rh5DG089200 Rh5DG089300 Rh5DG089400 Rh5DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	716
AccB1I	GGYRCC	1 cut(s)	79
AclWI	GGATC	3 cut(s)	211, 655, 711
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	3 cut(s)	372, 590, 767
AfiI	CCNNNNNNNGG	3 cut(s)	126, 200, 454
AgsI	TTSAA	7 cut(s)	52, 107, 170, 238, 498, 715, 773
AjnI	CCWGG	2 cut(s)	292, 333
AluBI	AGCT	3 cut(s)	55, 322, 799
AluI	AGCT	3 cut(s)	55, 322, 799
AlwI	GGATC	3 cut(s)	211, 655, 711
AoxI	GGCC	2 cut(s)	507, 578
ApeKI	GCWGC	1 cut(s)	322
ApoI	RAATTY	3 cut(s)	372, 590, 767
AseI	ATTAAT	1 cut(s)	269
AspLEI	GCGC	2 cut(s)	213, 762
AspS9I	GGNCC	3 cut(s)	512, 578, 678
AsuC2I	CCSGG	2 cut(s)	367, 449
AsuHPI	GGTGA	2 cut(s)	183, 740
AsuII	TTCGAA	1 cut(s)	794
AvaII	GGWCC	2 cut(s)	512, 678
BanI	GGYRCC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	529, 569
BciT130I	CCWGG	2 cut(s)	294, 335
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	367, 449
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	763
BfuAI	ACCTGC	1 cut(s)	716
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	4 cut(s)	294, 335, 367, 449
Bme18I	GGWCC	2 cut(s)	512, 678
BmgT120I	GGNCC	3 cut(s)	512, 578, 678
BmiI	GGNNCC	2 cut(s)	81, 514
BmrFI	CCNGG	4 cut(s)	294, 335, 367, 449
BmrI	ACTGGG	2 cut(s)	68, 463
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	2 cut(s)	68, 463
BpmI	CTGGAG	2 cut(s)	317, 636
Bpu14I	TTCGAA	1 cut(s)	794
BpuEI	CTTGAG	2 cut(s)	69, 577
BpuMI	CCSGG	2 cut(s)	367, 449
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 200, 454
Bse1I	ACTGG	4 cut(s)	63, 458, 489, 619
BseBI	CCWGG	2 cut(s)	294, 335
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	580, 737
BseLI	CCNNNNNNNGG	3 cut(s)	126, 200, 454
BseMII	CTCAG	4 cut(s)	198, 593, 721, 747
BseNI	ACTGG	4 cut(s)	63, 458, 489, 619
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	309
BsgI	GTGCAG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	509, 580
BshNI	GGYRCC	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	366, 449, 510
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	3 cut(s)	126, 200, 454
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	2 cut(s)	233, 493
BsnI	GGCC	2 cut(s)	509, 580
Bsp119I	TTCGAA	1 cut(s)	794
Bsp143I	GATC	5 cut(s)	42, 203, 273, 660, 703
BspANI	GGCC	2 cut(s)	509, 580
BspCNI	CTCAG	4 cut(s)	199, 594, 720, 748
BspLI	GGNNCC	2 cut(s)	81, 514
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	3 cut(s)	211, 655, 711
BspQI	GCTCTTC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	794
BspT107I	GGYRCC	1 cut(s)	79
BsrI	ACTGG	4 cut(s)	63, 458, 489, 619
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	5 cut(s)	42, 203, 273, 660, 703
Bst2UI	CCWGG	2 cut(s)	294, 335
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	794
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	6 cut(s)	75, 207, 602, 707, 756, 777
BstF5I	GGATG	2 cut(s)	580, 737
BstH2I	RGCGCY	1 cut(s)	763
BstHHI	GCGC	2 cut(s)	213, 762
BstKTI	GATC	5 cut(s)	45, 206, 276, 663, 706
BstMBI	GATC	5 cut(s)	42, 203, 273, 660, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstNI	CCWGG	2 cut(s)	294, 335
BstSCI	CCNGG	4 cut(s)	292, 333, 365, 447
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	1 cut(s)	309
BstX2I	RGATCY	3 cut(s)	203, 660, 703
BstYI	RGATCY	3 cut(s)	203, 660, 703
BsuRI	GGCC	2 cut(s)	509, 580
BtsCI	GGATG	2 cut(s)	580, 737
BtsI	GCAGTG	2 cut(s)	138, 741
BtsIMutI	CAGTG	3 cut(s)	138, 246, 741
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	748
CfoI	GCGC	2 cut(s)	213, 762
Cfr13I	GGNCC	3 cut(s)	512, 578, 678
CspCI	CAANNNNNGTGG	2 cut(s)	5, 40
CviAII	CATG	4 cut(s)	257, 551, 571, 682
CviJI	RGCY	6 cut(s)	8, 55, 322, 509, 580, 799
CviKI_1	RGCY	6 cut(s)	8, 55, 322, 509, 580, 799
DdeI	CTNAG	6 cut(s)	75, 207, 602, 707, 756, 777
DpnI	GATC	5 cut(s)	44, 205, 275, 662, 705
DpnII	GATC	5 cut(s)	42, 203, 273, 660, 703
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	512, 678
EcoRII	CCWGG	2 cut(s)	292, 333
EcoT22I	ATGCAT	1 cut(s)	495
FaeI	CATG	4 cut(s)	260, 554, 574, 685
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	4 cut(s)	256, 550, 570, 681
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	2 cut(s)	587, 724
Fsp4HI	GCNGC	1 cut(s)	323
GlaI	GCGC	2 cut(s)	212, 761
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	2 cut(s)	317, 636
HaeII	RGCGCY	1 cut(s)	763
HaeIII	GGCC	2 cut(s)	509, 580
HapII	CCGG	3 cut(s)	366, 449, 510
HhaI	GCGC	2 cut(s)	213, 762
Hin1II	CATG	4 cut(s)	260, 554, 574, 685
Hin6I	GCGC	2 cut(s)	211, 760
HinP1I	GCGC	2 cut(s)	211, 760
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	4 cut(s)	71, 188, 688, 773
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	366, 449, 510
HphI	GGTGA	2 cut(s)	183, 740
Hpy166II	GTNNAC	2 cut(s)	13, 731
Hpy188I	TCNGA	3 cut(s)	208, 378, 656
Hpy188III	TCNNGA	5 cut(s)	86, 107, 238, 587, 692
Hpy8I	GTNNAC	2 cut(s)	13, 731
HpyAV	CCTTC	1 cut(s)	373
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	38, 460, 493, 550, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	6 cut(s)	75, 207, 602, 707, 756, 777
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	260, 554, 574, 685
HspAI	GCGC	2 cut(s)	211, 760
Ksp22I	TGATCA	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	42, 203, 273, 660, 703
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	804
Lsp1109I	GCAGC	1 cut(s)	309
LweI	GCATC	1 cut(s)	88
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	4 cut(s)	189, 422, 566, 644
MalI	GATC	5 cut(s)	44, 205, 275, 662, 705
MboI	GATC	5 cut(s)	42, 203, 273, 660, 703
MboII	GAAGA	2 cut(s)	95, 697
MflI	RGATCY	3 cut(s)	203, 660, 703
MluCI	AATT	6 cut(s)	111, 216, 372, 463, 590, 767
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	6 cut(s)	82, 93, 341, 552, 630, 812
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	6 cut(s)	12, 147, 269, 354, 419, 435
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	3 cut(s)	366, 449, 510
MspR9I	CCNGG	4 cut(s)	294, 335, 367, 449
Mva1269I	GAATGC	2 cut(s)	233, 493
MvaI	CCWGG	2 cut(s)	294, 335
MwoI	GCNNNNNNNGC	1 cut(s)	298
NciI	CCSGG	2 cut(s)	367, 449
NdeII	GATC	5 cut(s)	42, 203, 273, 660, 703
NlaIII	CATG	4 cut(s)	260, 554, 574, 685
NlaIV	GGNNCC	2 cut(s)	81, 514
NmuCI	GTSAC	3 cut(s)	189, 422, 566
NsiI	ATGCAT	1 cut(s)	495
NspV	TTCGAA	1 cut(s)	794
PaqCI	CACCTGC	1 cut(s)	716
PciSI	GCTCTTC	1 cut(s)	108
PctI	GAATGC	2 cut(s)	233, 493
PfeI	GAWTC	3 cut(s)	71, 688, 773
PfoI	TCCNGGA	2 cut(s)	333, 447
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PshBI	ATTAAT	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	292, 333
PspGI	CCWGG	2 cut(s)	292, 333
PspN4I	GGNNCC	2 cut(s)	81, 514
PspPI	GGNCC	3 cut(s)	512, 578, 678
PstI	CTGCAG	1 cut(s)	748
PsuI	RGATCY	3 cut(s)	203, 660, 703
RseI	CAYNNNNRTG	1 cut(s)	498
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	6 cut(s)	12, 147, 269, 354, 419, 435
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	5 cut(s)	42, 203, 273, 660, 703
Sau96I	GGNCC	3 cut(s)	512, 578, 678
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	4 cut(s)	294, 335, 367, 449
SetI	ASST	9 cut(s)	21, 57, 81, 283, 310, 324, 333, 730, 801
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	794
SinI	GGWCC	2 cut(s)	512, 678
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	84, 556
SmoI	CTYRAG	2 cut(s)	84, 556
Sse9I	AATT	6 cut(s)	111, 216, 372, 463, 590, 767
SspI	AATATT	1 cut(s)	529
StyD4I	CCNGG	4 cut(s)	292, 333, 365, 447
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	1 cut(s)	794
TasI	AATT	6 cut(s)	111, 216, 372, 463, 590, 767
TfiI	GAWTC	3 cut(s)	71, 688, 773
Tru1I	TTAA	6 cut(s)	12, 147, 269, 354, 419, 435
Tru9I	TTAA	6 cut(s)	12, 147, 269, 354, 419, 435
TscAI	CASTG	3 cut(s)	138, 253, 748
TseFI	GTSAC	3 cut(s)	189, 422, 566
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	3 cut(s)	189, 422, 566
TspDTI	ATGAA	4 cut(s)	19, 453, 698, 726
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	138, 253, 748
VpaK11BI	GGWCC	2 cut(s)	512, 678
VspI	ATTAAT	1 cut(s)	269
XapI	RAATTY	3 cut(s)	372, 590, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.