Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Reverse (-)

10130050 .. 10132192

Gene Structure 2143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGACATCAAGAACATTCACAAGACATTCCAGTCTCATTCATGTTTTTCTCCTGCTTTCTCTCGTTTTCTCAGGGAATATACTACAAACAGTAACGTCTCTTGGCATCAATTACGGACAAGTTGGGAACAATTTGCCTTCACCGGATAAAGTCATTAACCTCTTGAGATCTTTAAGGATCACAAAAACAAGAATTTACGACACTAACCCTCAAATCCTTAGTGCCTTTGCAAATTCAAACATCGAGATCATCGTCACCATCGAAAATCAGGTTTTACCATTACTACAAGATCCTCAACAAGCTACCCAATGGGTAGATTCTCACATTAAACCCTATGTTCCGGCCACTAGGATTACCGGAATTATGGTCGGAAACGAGCTTTTCACCGACGACGACTCTAGTTTAATAGGATACATGATGCCGGCGATAATCAACATCCACAAAGCCTTGGTCCAATTAGGTTTAGATAGATACATTCAAGTCTCGTCTCCAAGCTCTCTTGCCGTCCTCGGTGAATCTTATCCTCCATCTGCCGGAAGTTTCAAGCCGGAGGTTTCCTCCGTGATGCAACAACTTCTAGATTTCTTGGAAGCCACGAAATCTCCTTTTTGGATAAATGCTTACCCTTACTTTGCCTACAAAGATAACCCACAAGAAATCCCAGTCGATTACGTTCTATTCAACCGTAACATCGGCATGACCGATCCCAACACAAGACTACACTACGACAACATGATGTATGCTCAAGTTGACGCAGTTGCTTTCGCGGCTGCGAAACTAGGGTACCGTAACATAGAAGTTAGGGTTGCGGAAACAGGGTGGCCTTCAAAAGGAGATGTCGGAGAGATTGGAGCGTCTCCTGTGAATGCTGCCACGTATAACCGGAATCTTATGATGAGGCAATTCGCCGGAGAAGGAACTCCAGCGAGACGGAATGCAAGACTCGATGTTTATATATTTGCGTTGTTCAATGAAGATATGAAACCAGGTCCTACTTCGGAGAAAAACTACGGTATATTCCAACCAGATGGATCATTAGCTTACAATTTGGGATTCTCTACAATGTCGACAACGACGGCAAATTCAGAATCTGTCACTTATTCATCCTCTGCCACTAAGGCAAAGAGGAGCTTGGAGTATTGGACAATTTTGATATTGGCGATGGTTCAAGTTGTAATGTTGAGACTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

397

Amino Acids

44.16

Weight (kDa)

6.23

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	34 - 352	6.9e-83	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	783
AccB1I	GGYRCC	1 cut(s)	783
AccI	GTMKAC	1 cut(s)	1067
AccII	CGCG	1 cut(s)	767
AciI	CCGC	2 cut(s)	767, 809
AclWI	GGATC	4 cut(s)	185, 284, 698, 1039
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	3 cut(s)	192, 232, 1081
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	2 cut(s)	533, 830
AgsI	TTSAA	7 cut(s)	237, 479, 544, 682, 828, 970, 1169
AjnI	CCWGG	1 cut(s)	985
AluBI	AGCT	5 cut(s)	302, 379, 495, 1040, 1131
AluI	AGCT	5 cut(s)	302, 379, 495, 1040, 1131
Alw26I	GTCTC	7 cut(s)	38, 102, 487, 492, 861, 922, 1177
AlwI	GGATC	4 cut(s)	185, 284, 698, 1039
AlwNI	CAGNNNCTG	1 cut(s)	1091
AoxI	GGCC	2 cut(s)	342, 821
ApeKI	GCWGC	2 cut(s)	770, 869
ApoI	RAATTY	3 cut(s)	192, 232, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	435, 467
Asp718I	GGTACC	1 cut(s)	783
AspS9I	GGNCC	2 cut(s)	451, 989
AsuHPI	GGTGA	4 cut(s)	132, 247, 376, 524
AvaII	GGWCC	2 cut(s)	451, 989
BaeI	ACNNNNGTAYC	2 cut(s)	767, 800
BanI	GGYRCC	1 cut(s)	783
BbvI	GCAGC	2 cut(s)	757, 856
BccI	CCATC	4 cut(s)	266, 535, 1022, 1156
BceAI	ACGGC	2 cut(s)	488, 1092
BciT130I	CCWGG	1 cut(s)	987
BciVI	GTATCC	1 cut(s)	404
BcoDI	GTCTC	7 cut(s)	38, 102, 487, 492, 861, 922, 1177
BfaI	CTAG	4 cut(s)	348, 399, 578, 779
BfuI	GTATCC	1 cut(s)	404
BglI	GCCNNNNNGGC	1 cut(s)	1118
BglII	AGATCT	1 cut(s)	167
BisI	GCNGC	3 cut(s)	768, 771, 870
BlsI	GCNGC	3 cut(s)	769, 772, 871
Bme1390I	CCNGG	1 cut(s)	987
Bme18I	GGWCC	2 cut(s)	451, 989
BmgT120I	GGNCC	2 cut(s)	451, 989
BmiI	GGNNCC	1 cut(s)	785
BmrFI	CCNGG	1 cut(s)	987
BmrI	ACTGGG	1 cut(s)	656
BmsI	GCATC	3 cut(s)	114, 408, 555
BmuI	ACTGGG	1 cut(s)	656
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpmI	CTGGAG	1 cut(s)	906
BpuEI	CTTGAG	2 cut(s)	184, 729
BsaAI	YACGTR	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	447, 508
BsaWI	WCCGGW	3 cut(s)	142, 356, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	586, 616
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 830
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	2 cut(s)	30, 662
BseBI	CCWGG	1 cut(s)	987
BseDI	CCNNGG	2 cut(s)	447, 508
BseGI	GGATG	2 cut(s)	435, 1103
BseLI	CCNNNNNNNGG	2 cut(s)	533, 830
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	2 cut(s)	30, 662
BseRI	GAGGAG	1 cut(s)	1141
BseXI	GCAGC	2 cut(s)	757, 856
Bsh1236I	CGCG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	344, 823
BshNI	GGYRCC	1 cut(s)	783
BsiSI	CCGG	8 cut(s)	143, 341, 357, 422, 534, 548, 883, 909
BslI	CCNNNNNNNGG	2 cut(s)	533, 830
BsmAI	GTCTC	7 cut(s)	38, 102, 487, 492, 861, 922, 1177
BsmBI	CGTCTC	4 cut(s)	102, 492, 861, 922
BsmI	GAATGC	2 cut(s)	871, 940
BsnI	GGCC	2 cut(s)	344, 823
Bsp143I	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
BspACI	CCGC	2 cut(s)	767, 809
BspANI	GGCC	2 cut(s)	344, 823
BspCNI	CTCAG	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	767
BspLI	GGNNCC	1 cut(s)	785
BspPI	GGATC	4 cut(s)	185, 284, 698, 1039
BspT107I	GGYRCC	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	2 cut(s)	30, 662
BssAI	RCCGGY	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	447, 508
BssMI	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	987
Bst4CI	ACNGT	4 cut(s)	91, 686, 788, 1013
BstBAI	YACGTR	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	3 cut(s)	70, 218, 1116
BstENI	CCTNNNNNAGG	1 cut(s)	828
BstF5I	GGATG	2 cut(s)	435, 1103
BstFNI	CGCG	1 cut(s)	767
BstKTI	GATC	6 cut(s)	170, 180, 249, 292, 706, 1034
BstMAI	GTCTC	7 cut(s)	38, 102, 487, 492, 861, 922, 1177
BstMBI	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
BstMWI	GCNNNNNNNGC	2 cut(s)	767, 1118
BstNI	CCWGG	1 cut(s)	987
BstSCI	CCNGG	1 cut(s)	985
BstUI	CGCG	1 cut(s)	767
BstV1I	GCAGC	2 cut(s)	757, 856
BstX2I	RGATCY	2 cut(s)	167, 289
BstXI	CCANNNNNNTGG	1 cut(s)	1028
BstYI	RGATCY	2 cut(s)	167, 289
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	344, 823
BtgZI	GCGATG	1 cut(s)	1175
BtsCI	GGATG	2 cut(s)	435, 1103
Cac8I	GCNNGC	1 cut(s)	423
CaiI	CAGNNNCTG	1 cut(s)	1091
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	451, 989
CseI	GACGC	2 cut(s)	761, 843
CsiI	ACCWGGT	1 cut(s)	985
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	4 cut(s)	41, 415, 697, 733
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	3 cut(s)	70, 218, 1116
DpnI	GATC	6 cut(s)	169, 179, 248, 291, 705, 1033
DpnII	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	447
Eco47I	GGWCC	2 cut(s)	451, 989
EcoNI	CCTNNNNNAGG	1 cut(s)	828
EcoO109I	RGGNCCY	1 cut(s)	989
EcoRII	CCWGG	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	4 cut(s)	102, 492, 861, 922
FaeI	CATG	4 cut(s)	44, 418, 700, 736
FalI	AAGNNNNNCTT	2 cut(s)	1115, 1147
FatI	CATG	4 cut(s)	40, 414, 696, 732
FblI	GTMKAC	1 cut(s)	1067
Fnu4HI	GCNGC	3 cut(s)	768, 771, 870
FokI	GGATG	2 cut(s)	422, 1090
Fsp4HI	GCNGC	3 cut(s)	768, 771, 870
FspBI	CTAG	4 cut(s)	348, 399, 578, 779
GluI	GCNGC	3 cut(s)	768, 771, 870
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	2 cut(s)	344, 823
HapII	CCGG	8 cut(s)	143, 341, 357, 422, 534, 548, 883, 909
HgaI	GACGC	2 cut(s)	761, 843
Hin1II	CATG	4 cut(s)	44, 418, 700, 736
HincII	GTYRAC	2 cut(s)	751, 1068
HindII	GTYRAC	2 cut(s)	751, 1068
HinfI	GANTC	7 cut(s)	317, 395, 515, 886, 942, 1053, 1088
HpaII	CCGG	8 cut(s)	143, 341, 357, 422, 534, 548, 883, 909
HphI	GGTGA	4 cut(s)	132, 247, 376, 524
Hpy166II	GTNNAC	2 cut(s)	751, 1068
Hpy188I	TCNGA	4 cut(s)	371, 842, 1000, 1087
Hpy188III	TCNNGA	4 cut(s)	9, 163, 244, 578
Hpy8I	GTNNAC	2 cut(s)	751, 1068
Hpy99I	CGWCG	3 cut(s)	392, 395, 1078
HpyAV	CCTTC	3 cut(s)	147, 834, 908
HpyCH4III	ACNGT	4 cut(s)	91, 686, 788, 1013
HpyCH4IV	ACGT	3 cut(s)	95, 672, 875
HpyCH4V	TGCA	3 cut(s)	230, 568, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	767, 1118
HpyF3I	CTNAG	3 cut(s)	70, 218, 1116
HpySE526I	ACGT	3 cut(s)	95, 672, 875
Hsp92II	CATG	4 cut(s)	44, 418, 700, 736
KpnI	GGTACC	1 cut(s)	787
KroI	GCCGGC	1 cut(s)	421
KroNI	GCCGGC	1 cut(s)	423
Kzo9I	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
LmnI	GCTCC	2 cut(s)	851, 1128
Lsp1109I	GCAGC	2 cut(s)	757, 856
LweI	GCATC	3 cut(s)	114, 408, 555
MabI	ACCWGGT	1 cut(s)	985
MaeI	CTAG	4 cut(s)	348, 399, 578, 779
MaeII	ACGT	3 cut(s)	95, 672, 875
MaeIII	GTNAC	5 cut(s)	91, 253, 686, 788, 1093
MalI	GATC	6 cut(s)	169, 179, 248, 291, 705, 1033
MboI	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
MboII	GAAGA	1 cut(s)	986
MflI	RGATCY	2 cut(s)	167, 289
MlyI	GAGTC	2 cut(s)	389, 936
MmeI	TCCRAC	3 cut(s)	349, 820, 1045
MroNI	GCCGGC	1 cut(s)	421
MseI	TTAA	4 cut(s)	156, 173, 327, 404
MslI	CAYNNNNRTG	1 cut(s)	695
MspI	CCGG	8 cut(s)	143, 341, 357, 422, 534, 548, 883, 909
MspR9I	CCNGG	1 cut(s)	987
Mva1269I	GAATGC	2 cut(s)	871, 940
MvaI	CCWGG	1 cut(s)	987
MvnI	CGCG	1 cut(s)	767
MwoI	GCNNNNNNNGC	2 cut(s)	767, 1118
NaeI	GCCGGC	1 cut(s)	423
NdeII	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
NgoMIV	GCCGGC	1 cut(s)	421
NlaIII	CATG	4 cut(s)	44, 418, 700, 736
NlaIV	GGNNCC	1 cut(s)	785
NmuCI	GTSAC	2 cut(s)	253, 1093
PcsI	WCGNNNNNNNCGW	3 cut(s)	249, 258, 699
PctI	GAATGC	2 cut(s)	871, 940
PdiI	GCCGGC	1 cut(s)	423
PfeI	GAWTC	5 cut(s)	317, 515, 886, 1053, 1088
PkrI	GCNGC	3 cut(s)	769, 772, 871
PleI	GAGTC	2 cut(s)	389, 936
PpsI	GAGTC	2 cut(s)	389, 936
Ppu21I	YACGTR	1 cut(s)	876
PpuMI	RGGWCCY	1 cut(s)	989
Psp5II	RGGWCCY	1 cut(s)	989
Psp6I	CCWGG	1 cut(s)	985
PspGI	CCWGG	1 cut(s)	985
PspN4I	GGNNCC	1 cut(s)	785
PspPI	GGNCC	2 cut(s)	451, 989
PspPPI	RGGWCCY	1 cut(s)	989
PstNI	CAGNNNCTG	1 cut(s)	1091
PsuI	RGATCY	2 cut(s)	167, 289
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	1 cut(s)	695
SalI	GTCGAC	1 cut(s)	1066
SaqAI	TTAA	4 cut(s)	156, 173, 327, 404
SatI	GCNGC	3 cut(s)	768, 771, 870
Sau3AI	GATC	6 cut(s)	167, 177, 246, 289, 703, 1031
Sau96I	GGNCC	2 cut(s)	451, 989
SchI	GAGTC	2 cut(s)	389, 936
ScrFI	CCNGG	1 cut(s)	987
SexAI	ACCWGGT	1 cut(s)	985
SfaNI	GCATC	3 cut(s)	114, 408, 555
SinI	GGWCC	2 cut(s)	451, 989
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	163, 744
SmoI	CTYRAG	2 cut(s)	163, 744
SsiI	CCGC	2 cut(s)	767, 809
SspMI	CTAG	4 cut(s)	348, 399, 578, 779
StyD4I	CCNGG	1 cut(s)	985
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	91, 686, 788, 1013
TaiI	ACGT	3 cut(s)	98, 675, 878
TaqI	TCGA	5 cut(s)	243, 261, 666, 945, 1067
TaqII	GACCGA	1 cut(s)	716
TauI	GCSGC	1 cut(s)	770
TfiI	GAWTC	5 cut(s)	317, 515, 886, 1053, 1088
Tru1I	TTAA	4 cut(s)	156, 173, 327, 404
Tru9I	TTAA	4 cut(s)	156, 173, 327, 404
TseFI	GTSAC	2 cut(s)	253, 1093
TseI	GCWGC	2 cut(s)	770, 869
Tsp45I	GTSAC	2 cut(s)	253, 1093
TspDTI	ATGAA	4 cut(s)	29, 987, 995, 1092
TspGWI	ACGGA	3 cut(s)	129, 550, 946
VpaK11BI	GGWCC	2 cut(s)	451, 989
XagI	CCTNNNNNAGG	1 cut(s)	828
XapI	RAATTY	3 cut(s)	192, 232, 1081
XbaI	TCTAGA	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	1067
XspI	CTAG	4 cut(s)	348, 399, 578, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.