Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Forward (+)

52712630 .. 52713319

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG368800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCAATGTGTACCAAAATCAGTGCTGCTTTTCTTCTTCTATGTTGGTTGATATGTTTCTCAGGGTTTGGTTTCGTACAAAGAGTTGTGTCGCTTGGTATCAACTACGGCCAACTCGGCGACAATTTGCTACAACCACAGCAAATGAGCCTCTTAAGGTCCAACAATATCACAAAAACAAGAATTTACGACACCAATCCGCAGATACTAACTGCATTCGCAAATTCGGATATTGAGCTCATTGTGACAGTGGAAAACGAAATGCTAAGCCAATTAACCAACCCCCAAGCAGCCCTTCAATGGGTTACTACACACATCAAGCCTTATTTTCTCTCCACGAAAATCACAGGCATTATGATAGGGAACGAGATTGATGCAACGGATTTGCTAGCTAGCCTTGTACCGGCCATGTCCAGCATTCAAAAGGCCCTATCTCAGTTAGGCCTTGATTCACACATCAAGCTGTCATCGCCTTTTTCTTTTTCGGTGATGGAAGAGTCTTATCCACCTTCTGCTGGCAGTTTCAAAAGCGAGGTCTCGGGTGTGATGTCACAATTGTTACAGTTTTTGTCAAGCACAAAGGCGCCGTTTTTGGATCAATGCAGATCCTTACTTTGCGTGCAAGGGCAACTCGAAAGAAATTCCTCTAGACTGTGCTTTTCAGTAATGCCGGTTCATCAGCAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

229

Amino Acids

25.25

Weight (kDa)

5.91

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	32 - 201	6.2e-36	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	600, 603
AcoI	YGGCCR	2 cut(s)	109, 405
AcsI	RAATTY	3 cut(s)	183, 223, 640
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	3 cut(s)	13, 78, 402
AfiI	CCNNNNNNNGG	4 cut(s)	300, 301, 403, 515
AflII	CTTAAG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	299, 422, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	3 cut(s)	238, 392, 463
AluI	AGCT	3 cut(s)	238, 392, 463
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	600, 603
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	4 cut(s)	109, 405, 426, 442
ApeKI	GCWGC	2 cut(s)	26, 290
ApoI	RAATTY	3 cut(s)	183, 223, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	519, 551
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	2 cut(s)	159, 427
AsuHPI	GGTGA	1 cut(s)	499
AsuNHI	GCTAGC	2 cut(s)	388, 392
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	13, 302
BccI	CCATC	1 cut(s)	484
BceAI	ACGGC	2 cut(s)	124, 571
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	3 cut(s)	389, 393, 648
BfoI	RGCGCY	1 cut(s)	587
BfrI	CTTAAG	1 cut(s)	154
BglI	GCCNNNNNGGC	1 cut(s)	117
BisI	GCNGC	2 cut(s)	27, 291
BlpI	GCTNAGC	1 cut(s)	266
BlsI	GCNGC	2 cut(s)	28, 292
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	159, 427
BmiI	GGNNCC	1 cut(s)	585
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	2 cut(s)	392, 396
Bpu1102I	GCTNAGC	1 cut(s)	266
BsaHI	GRCGYC	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	4 cut(s)	300, 301, 403, 515
Bse118I	RCCGGY	2 cut(s)	403, 670
Bse3DI	GCAATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	4 cut(s)	300, 301, 403, 515
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	75, 449
BseXI	GCAGC	2 cut(s)	13, 302
BshFI	GGCC	4 cut(s)	111, 407, 428, 444
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	404, 671
BslI	CCNNNNNNNGG	4 cut(s)	300, 301, 403, 515
BsmAI	GTCTC	1 cut(s)	541
BsmI	GAATGC	2 cut(s)	215, 417
BsnI	GGCC	4 cut(s)	111, 407, 428, 444
Bso31I	GGTCTC	1 cut(s)	541
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	595, 605
Bsp1720I	GCTNAGC	1 cut(s)	266
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	4 cut(s)	111, 407, 428, 444
BspCNI	CTCAG	2 cut(s)	74, 448
BspLI	GGNNCC	1 cut(s)	585
BspOI	GCTAGC	2 cut(s)	392, 396
BspPI	GGATC	2 cut(s)	600, 603
BspT107I	GGYRCC	1 cut(s)	583
BspTI	CTTAAG	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	403, 670
BssAI	RCCGGY	2 cut(s)	403, 670
BssMI	GATC	2 cut(s)	595, 605
BssNI	GRCGYC	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	250, 564, 654
Bst6I	CTCTTC	1 cut(s)	489
BstACI	GRCGYC	1 cut(s)	584
BstAFI	CTTAAG	1 cut(s)	154
BstC8I	GCNNGC	4 cut(s)	390, 394, 517, 620
BstDEI	CTNAG	3 cut(s)	61, 266, 435
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	2 cut(s)	598, 608
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	2 cut(s)	595, 605
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 469
BstV1I	GCAGC	2 cut(s)	13, 302
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	4 cut(s)	111, 407, 428, 444
BtgZI	GCGATG	1 cut(s)	453
BtsIMutI	CAGTG	2 cut(s)	28, 255
Cac8I	GCNNGC	4 cut(s)	390, 394, 517, 620
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	2 cut(s)	403, 670
Cfr13I	GGNCC	2 cut(s)	159, 427
Csp6I	GTAC	3 cut(s)	12, 77, 401
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	3 cut(s)	12, 77, 401
DdeI	CTNAG	3 cut(s)	61, 266, 435
DinI	GGCGCC	1 cut(s)	585
DpnI	GATC	2 cut(s)	597, 607
DpnII	GATC	2 cut(s)	595, 605
EaeI	YGGCCR	2 cut(s)	109, 405
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	538
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	240
EgeI	GGCGCC	1 cut(s)	585
EheI	GGCGCC	1 cut(s)	585
FaeI	CATG	1 cut(s)	412
FaiI	YATR	4 cut(s)	43, 55, 356, 410
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	27, 291
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	27, 291
FspBI	CTAG	3 cut(s)	389, 393, 648
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	27, 291
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	4 cut(s)	111, 407, 428, 444
HapII	CCGG	2 cut(s)	404, 671
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HinfI	GANTC	2 cut(s)	449, 497
HpaII	CCGG	2 cut(s)	404, 671
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	648
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	305, 519
HpyCH4III	ACNGT	3 cut(s)	250, 564, 654
HpyCH4V	TGCA	4 cut(s)	215, 377, 603, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 469
HpyF3I	CTNAG	3 cut(s)	61, 266, 435
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	1 cut(s)	584
KasI	GGCGCC	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	595, 605
LpnPI	CCDG	7 cut(s)	48, 333, 417, 427, 501, 668, 684
Lsp1109I	GCAGC	2 cut(s)	13, 302
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	389, 393, 648
MaeIII	GTNAC	4 cut(s)	244, 304, 549, 558
MalI	GATC	2 cut(s)	597, 607
MboI	GATC	2 cut(s)	595, 605
MboII	GAAGA	3 cut(s)	26, 29, 506
MfeI	CAATTG	1 cut(s)	554
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	6 cut(s)	124, 183, 223, 272, 554, 640
Mly113I	GGCGCC	1 cut(s)	584
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	3 cut(s)	161, 526, 655
MseI	TTAA	2 cut(s)	155, 275
MspCI	CTTAAG	1 cut(s)	154
MspI	CCGG	2 cut(s)	404, 671
MunI	CAATTG	1 cut(s)	554
Mva1269I	GAATGC	2 cut(s)	215, 417
MwoI	GCNNNNNNNGC	2 cut(s)	117, 469
NarI	GGCGCC	1 cut(s)	584
NdeII	GATC	2 cut(s)	595, 605
NheI	GCTAGC	2 cut(s)	388, 392
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	1 cut(s)	585
NmeAIII	GCCGAG	1 cut(s)	96
NmuCI	GTSAC	2 cut(s)	244, 549
PceI	AGGCCT	1 cut(s)	444
PctI	GAATGC	2 cut(s)	215, 417
PfeI	GAWTC	1 cut(s)	449
PkrI	GCNGC	2 cut(s)	28, 292
PleI	GAGTC	1 cut(s)	505
PluTI	GGCGCC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	585
PspPI	GGNCC	2 cut(s)	159, 427
PsrI	GAACNNNNNNTAC	2 cut(s)	657, 689
PsuI	RGATCY	1 cut(s)	605
RsaI	GTAC	3 cut(s)	13, 78, 402
RsaNI	GTAC	3 cut(s)	12, 77, 401
SacI	GAGCTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	155, 275
SatI	GCNGC	2 cut(s)	27, 291
Sau3AI	GATC	2 cut(s)	595, 605
Sau96I	GGNCC	2 cut(s)	159, 427
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	6 cut(s)	161, 240, 394, 465, 511, 537
SfaNI	GCATC	1 cut(s)	364
SfoI	GGCGCC	1 cut(s)	585
SinI	GGWCC	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	6 cut(s)	124, 183, 223, 272, 554, 640
SseBI	AGGCCT	1 cut(s)	444
SsiI	CCGC	1 cut(s)	200
SspDI	GGCGCC	1 cut(s)	583
SspMI	CTAG	3 cut(s)	389, 393, 648
SstI	GAGCTC	1 cut(s)	240
StuI	AGGCCT	1 cut(s)	444
TaaI	ACNGT	3 cut(s)	250, 564, 654
TaqI	TCGA	1 cut(s)	633
TasI	AATT	6 cut(s)	124, 183, 223, 272, 554, 640
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	155, 275
Tru9I	TTAA	2 cut(s)	155, 275
TscAI	CASTG	2 cut(s)	28, 255
TseFI	GTSAC	2 cut(s)	244, 549
TseI	GCWGC	2 cut(s)	26, 290
Tsp45I	GTSAC	2 cut(s)	244, 549
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	28, 255
Vha464I	CTTAAG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	3 cut(s)	183, 223, 640
XbaI	TCTAGA	1 cut(s)	647
XspI	CTAG	3 cut(s)	389, 393, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.