Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Reverse (-)

9679995 .. 9682116

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG106300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTGACAATCGAAAACGCAATGTTAGGCCAGTTGATGAACCCCCAAGCAGCCCTTCAATGGGTTAACGCCCACATCAAGCCTTATGTTCCCGCCACGAAAATATCCAGCATTGCGGTAGGGAATGAGGTCTTCACCGACGATGACACAACCGTGCTGCTAGATAATCTTGTCCCAGCCATGGTCAGCATTCAAGCGGCACTAACTCAGTTAGGCCTTGACTCAAACATTAAGGTCTCAACACCTTGCTCTTTAGCAGTGCTTGAAGAATCCTACCCGCCTTCCGCGGGGAGCTTCAAAACTGAAGTAGCTGGTGTCATGTCACAATTGTTACAGTTCTTGCAAACAACGAAGGCACCTTTTTGGATCAATGCCTATCCCTACTTTGCATACAAAGATAGCCCGAATAAAATTTCTCTAGACTATGTGCTCTTCAATCCCAATTCGGGCATGATTGACCCTTATACCAAGTTGCACTATGACAATATGTTGTATGCTCAAGTAGATGCAGCCATTTTCGCTATGGCGCGGTTGGGGTTCAATGGGATCGAGGTCAAGGTTTCGGAGACGGGGTGGCCATCCAAGGGCGATGCCAATGAAATCGGTGCAACTTTGCAGAATGCTGCTATTTACAATAGAAACTTGCTGAGGAGGCAATTGGCAAATGAAGGCACACCTTTGAGGCCTAGAATGAGGCTTGAAATCTATGTTTTTGCTCTTTTCAATGAGAACATGAAGCCTGGACCAACTTCAGAGAGGAATTACGGTCTATTTCAACCTGATGGAACTATGGCTTACAATGTGGGATTGTCTGCCTTGTCAACTACTTCAACTACCTCATCAACCTCGACAGCTTCAATTTCTGATCTCACTTCCTCTGCCACAAAGTCAATGGACTTTCACCAAAGCTGGGTGAGCTGCATCTTTGTTTCTGTGGTGACCTTCCAAGTTTATATGAGAAGACCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

323

Amino Acids

35.54

Weight (kDa)

5.43

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	3 - 268	2e-66	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccII	CGCG	2 cut(s)	287, 529
AciI	CCGC	7 cut(s)	93, 116, 197, 278, 285, 287, 529
AclWI	GGATC	2 cut(s)	374, 554
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	2 cut(s)	324, 735
AfiI	CCNNNNNNNGG	7 cut(s)	60, 61, 181, 287, 446, 584, 910
AjnI	CCWGG	1 cut(s)	739
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	5 cut(s)	294, 311, 854, 909, 918
AluI	AGCT	5 cut(s)	294, 311, 854, 909, 918
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	241, 560
AlwI	GGATC	2 cut(s)	374, 554
AoxI	GGCC	4 cut(s)	28, 214, 575, 683
ApeKI	GCWGC	5 cut(s)	50, 157, 509, 623, 918
ApoI	RAATTY	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	743
AsuHPI	GGTGA	5 cut(s)	16, 127, 893, 925, 949
AvaII	GGWCC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	355
BbsI	GAAGAC	2 cut(s)	124, 967
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	1 cut(s)	647
BbvI	GCAGC	5 cut(s)	62, 144, 521, 610, 905
BccI	CCATC	2 cut(s)	586, 776
BciT130I	CCWGG	1 cut(s)	741
BcoDI	GTCTC	2 cut(s)	241, 560
BfaI	CTAG	3 cut(s)	161, 419, 687
BisI	GCNGC	6 cut(s)	51, 158, 198, 510, 624, 919
BlsI	GCNGC	6 cut(s)	52, 159, 199, 511, 625, 920
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	1 cut(s)	743
BmgT120I	GGNCC	1 cut(s)	743
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	741
BmsI	GCATC	3 cut(s)	496, 580, 930
BpiI	GAAGAC	2 cut(s)	124, 967
Bpu10I	CCTNAGC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	180, 285, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	7 cut(s)	60, 61, 181, 287, 446, 584, 910
Bse1I	ACTGG	1 cut(s)	31
Bse3DI	GCAATG	2 cut(s)	27, 111
BseBI	CCWGG	1 cut(s)	741
BseDI	CCNNGG	3 cut(s)	180, 285, 582
BseGI	GGATG	1 cut(s)	578
BseLI	CCNNNNNNNGG	7 cut(s)	60, 61, 181, 287, 446, 584, 910
BseMI	GCAATG	2 cut(s)	27, 111
BseMII	CTCAG	2 cut(s)	221, 638
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	664
BseXI	GCAGC	5 cut(s)	62, 144, 521, 610, 905
BseYI	CCCAGC	2 cut(s)	175, 909
Bsh1236I	CGCG	2 cut(s)	287, 529
BshFI	GGCC	4 cut(s)	30, 216, 577, 685
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	432
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	7 cut(s)	60, 61, 181, 287, 446, 584, 910
BsmAI	GTCTC	2 cut(s)	241, 560
BsmBI	CGTCTC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	2 cut(s)	189, 625
BsnI	GGCC	4 cut(s)	30, 216, 577, 685
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	366, 546, 865
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	7 cut(s)	93, 116, 197, 278, 285, 287, 529
BspANI	GGCC	4 cut(s)	30, 216, 577, 685
BspCNI	CTCAG	2 cut(s)	220, 639
BspFNI	CGCG	2 cut(s)	287, 529
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	2 cut(s)	374, 554
BspQI	GCTCTTC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	27, 111
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	180, 285, 582
BssMI	GATC	3 cut(s)	366, 546, 865
BssT1I	CCWWGG	2 cut(s)	180, 582
Bst2UI	CCWGG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	154, 336, 767
Bst6I	CTCTTC	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	207, 647
BstDSI	CCRYGG	2 cut(s)	180, 285
BstEII	GGTNACC	1 cut(s)	937
BstF5I	GGATG	1 cut(s)	578
BstFNI	CGCG	2 cut(s)	287, 529
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	3 cut(s)	369, 549, 868
BstMAI	GTCTC	2 cut(s)	241, 560
BstMBI	GATC	3 cut(s)	366, 546, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 652, 915
BstNI	CCWGG	1 cut(s)	741
BstPI	GGTNACC	1 cut(s)	937
BstSCI	CCNGG	1 cut(s)	739
BstUI	CGCG	2 cut(s)	287, 529
BstV1I	GCAGC	5 cut(s)	62, 144, 521, 610, 905
BstV2I	GAAGAC	2 cut(s)	124, 967
BsuRI	GGCC	4 cut(s)	30, 216, 577, 685
BtgI	CCRYGG	2 cut(s)	180, 285
BtgZI	GCGATG	1 cut(s)	603
BtsCI	GGATG	1 cut(s)	578
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	743
Cfr42I	CCGCGG	1 cut(s)	288
CviAII	CATG	4 cut(s)	181, 319, 451, 733
DdeI	CTNAG	2 cut(s)	207, 647
DpnI	GATC	3 cut(s)	368, 548, 867
DpnII	GATC	3 cut(s)	366, 546, 865
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Eco130I	CCWWGG	2 cut(s)	180, 582
Eco147I	AGGCCT	2 cut(s)	216, 685
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	743
Eco57I	CTGAAG	2 cut(s)	324, 735
Eco91I	GGTNACC	1 cut(s)	937
EcoO65I	GGTNACC	1 cut(s)	937
EcoRII	CCWGG	1 cut(s)	739
EcoT14I	CCWWGG	2 cut(s)	180, 582
ErhI	CCWWGG	2 cut(s)	180, 582
Esp3I	CGTCTC	1 cut(s)	560
FaeI	CATG	4 cut(s)	184, 322, 454, 736
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	180, 318, 450, 732
FauI	CCCGC	3 cut(s)	100, 280, 285
Fnu4HI	GCNGC	6 cut(s)	51, 158, 198, 510, 624, 919
FokI	GGATG	1 cut(s)	565
Fsp4HI	GCNGC	6 cut(s)	51, 158, 198, 510, 624, 919
FspBI	CTAG	3 cut(s)	161, 419, 687
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	6 cut(s)	51, 158, 198, 510, 624, 919
GsaI	CCCAGC	2 cut(s)	179, 913
HaeIII	GGCC	4 cut(s)	30, 216, 577, 685
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	4 cut(s)	184, 322, 454, 736
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	2 cut(s)	67, 822
HindII	GTYRAC	2 cut(s)	67, 822
HinfI	GANTC	2 cut(s)	221, 269
HpaI	GTTAAC	1 cut(s)	67
HphI	GGTGA	5 cut(s)	16, 127, 893, 925, 949
Hpy166II	GTNNAC	2 cut(s)	67, 822
Hpy188I	TCNGA	3 cut(s)	565, 754, 865
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	2 cut(s)	67, 822
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	5 cut(s)	65, 291, 346, 662, 952
HpyCH4III	ACNGT	3 cut(s)	154, 336, 767
HpyCH4V	TGCA	7 cut(s)	343, 389, 475, 509, 608, 616, 921
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 652, 915
HpyF3I	CTNAG	2 cut(s)	207, 647
Hsp92II	CATG	4 cut(s)	184, 322, 454, 736
HspAI	GCGC	1 cut(s)	527
KspAI	GTTAAC	1 cut(s)	67
KspI	CCGCGG	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	366, 546, 865
LguI	GCTCTTC	1 cut(s)	437
LmnI	GCTCC	1 cut(s)	291
LpnPI	CCDG	8 cut(s)	44, 121, 189, 297, 726, 753, 792, 895
Lsp1109I	GCAGC	5 cut(s)	62, 144, 521, 610, 905
LweI	GCATC	3 cut(s)	496, 580, 930
MaeI	CTAG	3 cut(s)	161, 419, 687
MaeIII	GTNAC	4 cut(s)	4, 321, 330, 937
MalI	GATC	3 cut(s)	368, 548, 867
MboI	GATC	3 cut(s)	366, 546, 865
MboII	GAAGA	4 cut(s)	124, 278, 424, 972
MfeI	CAATTG	2 cut(s)	326, 656
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	6 cut(s)	326, 411, 442, 656, 760, 858
MluNI	TGGCCA	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	215
Mox20I	TGGCCA	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	3 cut(s)	66, 231, 970
MslI	CAYNNNNRTG	1 cut(s)	152
Msp20I	TGGCCA	1 cut(s)	577
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	741
MunI	CAATTG	2 cut(s)	326, 656
Mva1269I	GAATGC	2 cut(s)	189, 625
MvaI	CCWGG	1 cut(s)	741
MvnI	CGCG	2 cut(s)	287, 529
MwoI	GCNNNNNNNGC	3 cut(s)	518, 652, 915
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	366, 546, 865
NlaIII	CATG	4 cut(s)	184, 322, 454, 736
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	3 cut(s)	4, 321, 937
OliI	CACNNNNGTG	1 cut(s)	152
PceI	AGGCCT	2 cut(s)	216, 685
PciSI	GCTCTTC	1 cut(s)	437
PctI	GAATGC	2 cut(s)	189, 625
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	6 cut(s)	52, 159, 199, 511, 625, 920
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	739
PspEI	GGTNACC	1 cut(s)	937
PspFI	CCCAGC	2 cut(s)	175, 909
PspGI	CCWGG	1 cut(s)	739
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	743
RseI	CAYNNNNRTG	1 cut(s)	152
SacII	CCGCGG	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	66, 231, 970
SatI	GCNGC	6 cut(s)	51, 158, 198, 510, 624, 919
Sau3AI	GATC	3 cut(s)	366, 546, 865
Sau96I	GGNCC	1 cut(s)	743
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	496, 580, 930
Sfr303I	CCGCGG	1 cut(s)	288
SgrBI	CCGCGG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	743
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	6 cut(s)	326, 411, 442, 656, 760, 858
SseBI	AGGCCT	2 cut(s)	216, 685
SsiI	CCGC	7 cut(s)	93, 116, 197, 278, 285, 287, 529
SspMI	CTAG	3 cut(s)	161, 419, 687
StuI	AGGCCT	2 cut(s)	216, 685
StyD4I	CCNGG	1 cut(s)	739
StyI	CCWWGG	2 cut(s)	180, 582
TaaI	ACNGT	3 cut(s)	154, 336, 767
TaqI	TCGA	3 cut(s)	12, 549, 848
TasI	AATT	6 cut(s)	326, 411, 442, 656, 760, 858
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	66, 231, 970
Tru9I	TTAA	3 cut(s)	66, 231, 970
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	3 cut(s)	4, 321, 937
TseI	GCWGC	5 cut(s)	50, 157, 509, 623, 918
Tsp45I	GTSAC	3 cut(s)	4, 321, 937
TspDTI	ATGAA	4 cut(s)	53, 612, 681, 749
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	743
XapI	RAATTY	1 cut(s)	411
XbaI	TCTAGA	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	2 cut(s)	520, 889
XspI	CTAG	3 cut(s)	161, 419, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.