Rh5CG056600

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002223
Physical Location & Seq
Forward (+)
4114811 .. 4115113
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG056600.1

Sequence Viewer

Length: 303 bp
ATGCTAGCTGCATTTGCAAATTCCGGCAATGAGCTAACTGTAACAATTGAAAACGCAATGCTGAGCGAATTAACCAACCCCCAAGCAGCCCTTCTCTGGGTTAGCACACACATCAAGCCTTATTTTCCCGCAACAATCACCATCATTGCGCTAGGGAATGAGGTGGATGCAACCGACTTGCTAGCTAACCTTGTACTGGCCATGTCCAGCAATGAAGGGGCACTATCTCAGTTAGGCCTTGATTCATACATCAAGGTGTCAACGTGTAACACCCCTCACCCAGAAGATTTGAAAACAATTTAA

Protein Analysis

100

Amino Acids

10.64

Weight (kDa)

4.31

Isoelectric Point (pI)

29.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 2 - 88 1.8e-09 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 195
AfiI CCNNNNNNNGG 3 cut(s) 96, 97, 196
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 50, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 3 cut(s) 8, 34, 185
AluI AGCT 3 cut(s) 8, 34, 185
AoxI GGCC 2 cut(s) 198, 235
ApeKI GCWGC 2 cut(s) 8, 86
ApoI RAATTY 1 cut(s) 19
AspLEI GCGC 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 130, 269
AsuNHI GCTAGC 2 cut(s) 4, 181
BaeGI GKGCMC 1 cut(s) 223
BalI TGGCCA 1 cut(s) 200
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 149
BfaI CTAG 3 cut(s) 5, 152, 182
BisI GCNGC 2 cut(s) 9, 87
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 2 cut(s) 10, 88
BmsI GCATC 1 cut(s) 157
BmtI GCTAGC 2 cut(s) 8, 185
Bpu1102I GCTNAGC 1 cut(s) 62
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 97, 196
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 4 cut(s) 34, 63, 144, 217
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 96, 97, 196
BseMI GCAATG 4 cut(s) 34, 63, 144, 217
BseMII CTCAG 2 cut(s) 53, 242
BseNI ACTGG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 200, 237
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 96, 97, 196
BsnI GGCC 2 cut(s) 200, 237
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 1 cut(s) 129
BspANI GGCC 2 cut(s) 200, 237
BspCNI CTCAG 2 cut(s) 54, 241
BspOI GCTAGC 2 cut(s) 8, 185
BsrDI GCAATG 4 cut(s) 34, 63, 144, 217
BsrI ACTGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 6, 183
BstDEI CTNAG 2 cut(s) 62, 228
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 200, 237
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 6, 183
CfoI GCGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 194
CviAII CATG 1 cut(s) 202
CviJI RGCY 7 cut(s) 8, 34, 89, 118, 185, 200, 237
CviKI_1 RGCY 7 cut(s) 8, 34, 89, 118, 185, 200, 237
CviQI GTAC 1 cut(s) 194
DdeI CTNAG 2 cut(s) 62, 228
EaeI YGGCCR 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 237
FaeI CATG 1 cut(s) 205
FaiI YATR 2 cut(s) 203, 247
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FatI CATG 1 cut(s) 201
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 9, 87
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 9, 87
FspBI CTAG 3 cut(s) 5, 152, 182
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 9, 87
HaeIII GGCC 2 cut(s) 200, 237
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 205
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 1 cut(s) 242
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 130, 269
Hpy166II GTNNAC 1 cut(s) 261
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 2 cut(s) 101, 209
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 3 cut(s) 11, 17, 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 2 cut(s) 62, 228
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 1 cut(s) 205
HspAI GCGC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 37, 82, 182, 220, 294
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 157
MaeI CTAG 3 cut(s) 5, 152, 182
MaeII ACGT 1 cut(s) 263
MaeIII GTNAC 2 cut(s) 40, 266
MboII GAAGA 1 cut(s) 296
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 4 cut(s) 19, 45, 68, 297
MluNI TGGCCA 1 cut(s) 200
MnlI CCTC 2 cut(s) 154, 285
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 2 cut(s) 71, 301
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 200
MspI CCGG 1 cut(s) 24
MunI CAATTG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 14
NheI GCTAGC 2 cut(s) 4, 181
NlaIII CATG 1 cut(s) 205
PceI AGGCCT 1 cut(s) 237
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 10, 88
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 2 cut(s) 71, 301
SatI GCNGC 2 cut(s) 9, 87
SduI GDGCHC 1 cut(s) 223
SetI ASST 7 cut(s) 10, 36, 165, 187, 192, 258, 266
SfaNI GCATC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 254
Sse9I AATT 4 cut(s) 19, 45, 68, 297
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 1 cut(s) 129
SspMI CTAG 3 cut(s) 5, 152, 182
StuI AGGCCT 1 cut(s) 237
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 266
TasI AATT 4 cut(s) 19, 45, 68, 297
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 71, 301
Tru9I TTAA 2 cut(s) 71, 301
TseI GCWGC 2 cut(s) 8, 86
TspDTI ATGAA 2 cut(s) 228, 234
XapI RAATTY 1 cut(s) 19
XspI CTAG 3 cut(s) 5, 152, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.