FvH4_4g29790

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
29765460 .. 29767737
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29790.t1

Sequence Viewer

Length: 1530 bp
ATGAACATCAACAGCCCAATCTTCGGTGATCTACGAGCAAACTTTTCATCCCTACAGAAAAAGTTCTCCATGGCAAAGTGTACCAGAATCAATGCTGCTTTTCTTCTTCTATGTTGGTTGATCTGTTTCTCAGGATTCGGTTTCGTACAAAGAGTTTCAGCACTTGGTATCAACTACGGTCAACTAGGTGACAATTTGCTACAACCACAGCAAGTTGTGAGCCTCTTAAGGTTCAACAACATCACAAAAGCAAGAATTTTTGACACCAACCCTCAGATACTAACTGCATTCGCAAATTCGGATATTCAGCTCATTGTGACAGTGGAAAACACTATGCTAAGCCAACTAAGCAACCCCCAAGCAGCCATTCAGTGGGTCACTACACGCATCAAGCCTTACCTTCCGGCAACGAAAATCACAGACATTATGATAGGGAACGAGCTTGATGCAGCGGATTTGCTAGCTAGCCTTGTACCGGCCATGTCCAGCGTTCAAAAGGCACTATCTCAGTTAGGTCTTGATTCACACATCAAGGTGTCATCGCCTTTTTCTTATGGGGTGATGGGAGAGTCTTATCCACCTTCTGCTGCCAGTTTCAAAAGTGATGTCTCTGATATAATGTCACAAGTGTTACAGTTTTTGTCATCCACAAAATCACCATTTTGGATCAATGCATATCCTTACTTTGCATACAAGGGAAACTCGAAAGAAATTCCTCTAGACTATGTGCTTTTCAGCAACGACGGTTCATCGGCCGGAGTGACAGACCCTAGTAGCAATTTGCATTATGACAACTTGTTGTATGCTCAAGTAGATGCAGTCATTTATGCCACTAAGGCATTGGGGTTTGATGATATAGAGGTTAAGGTTGGGGAGACAGGGTGGCCATCGAAAGGGGATGATGATGAACTTGGTGCGAGTTTAGAGAATGCTGCTATATACAATGGGAACTTGTTGAAGAGGCAATTGGCCAACGAAGGTACACCTTTGCAGCCTACACTCGACGTCTATGTTTTTGCTCTTTTCAACGAGAACAAAAAGCATGGACCAACTTCGGAGAGGAATTTCGGTCTATTTCAACCGGATGGAACTGTGGTTTACAATGTGGGATTGACTGGATACTCATCTGCCAAAAATCCGGCTCCTAACTCAACTGATGCCCCTACCCCAACCCCATCAGAACCACCATCCTCCGATACAAGTTTAACTGATCCCCCTACCGCAACCCAAACCCCATCAGAACCACCATCCTCTGATACGGATTCAATTGAGCCCTCATCACCCCCAACTCCAACCCTATCAGAACCACCAACTTCAGATGCAAATTCAACTAATGCCTTATCACCCCCAACCCCGAGCCTATCAGAACCACCTACCTCATCACTTCCTGAGATCCCCATGACATATTCCTCCGGTGTCAAGACAGCAACAACTATGGGACGCTGGACGAAGTGGATCATTATTTTTAGTGTGCTAATCATTATATTTCTTGGTGCCATTGTGTGGTACTGCTGCAGCCGTTCCAATTAG

Protein Analysis

510

Amino Acids

55.0

Weight (kDa)

4.71

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 55 - 369 2.1e-79 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1008
AccB1I GGYRCC 1 cut(s) 1493
AccB7I CCANNNNNTGG 2 cut(s) 372, 1503
AciI CCGC 2 cut(s) 452, 1221
AclWI GGATC 4 cut(s) 674, 1205, 1387, 1463
AcoI YGGCCR 4 cut(s) 477, 753, 884, 969
AcsI RAATTY 5 cut(s) 255, 295, 711, 1063, 1324
AcuI CTGAAG 1 cut(s) 1299
AcyI GRCGYC 1 cut(s) 1005
AfaI GTAC 5 cut(s) 82, 147, 474, 982, 1508
AfiI CCNNNNNNNGG 5 cut(s) 23, 372, 475, 893, 1503
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 8 cut(s) 235, 494, 598, 958, 1027, 1079, 1266, 1329
AjuI GAANNNNNNNTTGG 4 cut(s) 351, 383, 950, 982
AluBI AGCT 3 cut(s) 310, 442, 464
AluI AGCT 3 cut(s) 310, 442, 464
Alw26I GTCTC 2 cut(s) 613, 869
AlwI GGATC 4 cut(s) 674, 1205, 1387, 1463
Ama87I CYCGRG 1 cut(s) 1354
AoxI GGCC 4 cut(s) 477, 753, 884, 969
ApeKI GCWGC 8 cut(s) 95, 362, 449, 587, 932, 991, 1512, 1515
ApoI RAATTY 5 cut(s) 255, 295, 711, 1063, 1324
ArsI GACNNNNNNTTYG 2 cut(s) 591, 623
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 1046
AsuHPI GGTGA 6 cut(s) 38, 200, 571, 648, 1272, 1335
AsuNHI GCTAGC 2 cut(s) 460, 464
AvaI CYCGRG 1 cut(s) 1354
AvaII GGWCC 1 cut(s) 1046
BalI TGGCCA 2 cut(s) 886, 971
BanI GGYRCC 1 cut(s) 1493
BanII GRGCYC 1 cut(s) 1275
BbvI GCAGC 7 cut(s) 82, 374, 461, 574, 919, 1003, 1499
BccI CCATC 7 cut(s) 556, 895, 1079, 1183, 1195, 1243, 1255
BceAI ACGGC 1 cut(s) 1503
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciVI GTATCC 1 cut(s) 1112
BcoDI GTCTC 2 cut(s) 613, 869
BfaI CTAG 5 cut(s) 185, 461, 465, 719, 771
BfmI CTRYAG 2 cut(s) 53, 1513
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 1112
BglI GCCNNNNNGGC 1 cut(s) 836
BisI GCNGC 8 cut(s) 96, 363, 450, 588, 933, 992, 1513, 1516
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 8 cut(s) 97, 364, 451, 589, 934, 993, 1514, 1517
Bme18I GGWCC 1 cut(s) 1046
BmeT110I CYCGRG 1 cut(s) 1354
BmgT120I GGNCC 1 cut(s) 1046
BmiI GGNNCC 2 cut(s) 1143, 1495
BmsI GCATC 5 cut(s) 396, 436, 805, 1147, 1309
BmtI GCTAGC 2 cut(s) 464, 468
Bpu1102I GCTNAGC 1 cut(s) 338
BpuEI CTTGAG 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 1123
BsaHI GRCGYC 1 cut(s) 1005
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 2 cut(s) 1081, 1412
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 372, 475, 893, 1503
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 2 cut(s) 591, 1120
Bse8I GATNNNNATC 1 cut(s) 1123
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 6 cut(s) 47, 644, 904, 1090, 1187, 1247
BseJI GATNNNNATC 1 cut(s) 1123
BseLI CCNNNNNNNGG 5 cut(s) 23, 372, 475, 893, 1503
BseMII CTCAG 4 cut(s) 144, 287, 521, 1380
BseNI ACTGG 2 cut(s) 591, 1120
BseX3I CGGCCG 1 cut(s) 753
BseXI GCAGC 7 cut(s) 82, 374, 461, 574, 919, 1003, 1499
Bsh1285I CGRYCG 1 cut(s) 756
BshFI GGCC 4 cut(s) 479, 755, 886, 971
BshNI GGYRCC 1 cut(s) 1493
BsiEI CGRYCG 1 cut(s) 756
BsiHKCI CYCGRG 1 cut(s) 1354
BsiSI CCGG 6 cut(s) 404, 476, 756, 1082, 1139, 1413
BslFI GGGAC 1 cut(s) 1452
BslI CCNNNNNNNGG 5 cut(s) 23, 372, 475, 893, 1503
BsmAI GTCTC 2 cut(s) 613, 869
BsmFI GGGAC 1 cut(s) 1452
BsmI GAATGC 2 cut(s) 287, 934
BsnI GGCC 4 cut(s) 479, 755, 886, 971
BsoBI CYCGRG 1 cut(s) 1354
Bsp1286I GDGCHC 1 cut(s) 1275
Bsp143I GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
Bsp1720I GCTNAGC 1 cut(s) 338
Bsp19I CCATGG 1 cut(s) 69
BspACI CCGC 2 cut(s) 452, 1221
BspANI GGCC 4 cut(s) 479, 755, 886, 971
BspCNI CTCAG 4 cut(s) 143, 286, 520, 1381
BspLI GGNNCC 2 cut(s) 1143, 1495
BspMAI CTGCAG 1 cut(s) 1517
BspOI GCTAGC 2 cut(s) 464, 468
BspPI GGATC 4 cut(s) 674, 1205, 1387, 1463
BspT107I GGYRCC 1 cut(s) 1493
BspTI CTTAAG 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 2 cut(s) 591, 1120
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
BssNI GRCGYC 1 cut(s) 1005
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 5 cut(s) 179, 322, 636, 746, 1093
Bst6I CTCTTC 1 cut(s) 953
BstACI GRCGYC 1 cut(s) 1005
BstAFI CTTAAG 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 462, 466
BstDEI CTNAG 7 cut(s) 130, 273, 338, 347, 507, 834, 1389
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 6 cut(s) 47, 644, 904, 1090, 1187, 1247
BstKTI GATC 6 cut(s) 31, 123, 669, 1213, 1395, 1458
BstMAI GTCTC 2 cut(s) 613, 869
BstMBI GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
BstMCI CGRYCG 1 cut(s) 756
BstMWI GCNNNNNNNGC 2 cut(s) 348, 836
BstSFI CTRYAG 2 cut(s) 53, 1513
BstV1I GCAGC 7 cut(s) 82, 374, 461, 574, 919, 1003, 1499
BstX2I RGATCY 1 cut(s) 1392
BstYI RGATCY 1 cut(s) 1392
BstZI CGGCCG 1 cut(s) 753
BsuI GTATCC 1 cut(s) 1112
BsuRI GGCC 4 cut(s) 479, 755, 886, 971
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 6 cut(s) 47, 644, 904, 1090, 1187, 1247
BtsIMutI CAGTG 2 cut(s) 327, 377
Cac8I GCNNGC 2 cut(s) 462, 466
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 1046
CseI GACGC 1 cut(s) 1449
Csp6I GTAC 5 cut(s) 81, 146, 473, 981, 1507
CviAII CATG 4 cut(s) 70, 481, 1043, 1399
CviQI GTAC 5 cut(s) 81, 146, 473, 981, 1507
DdeI CTNAG 7 cut(s) 130, 273, 338, 347, 507, 834, 1389
DpnI GATC 6 cut(s) 30, 122, 668, 1212, 1394, 1457
DpnII GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
EaeI YGGCCR 4 cut(s) 477, 753, 884, 969
EagI CGGCCG 1 cut(s) 753
Eam1104I CTCTTC 1 cut(s) 953
EarI CTCTTC 1 cut(s) 953
EclXI CGGCCG 1 cut(s) 753
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 1275
Eco47I GGWCC 1 cut(s) 1046
Eco52I CGGCCG 1 cut(s) 753
Eco57I CTGAAG 1 cut(s) 1299
Eco88I CYCGRG 1 cut(s) 1354
EcoT14I CCWWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 1275
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 4 cut(s) 73, 484, 1046, 1402
FaqI GGGAC 1 cut(s) 1452
FatI CATG 4 cut(s) 69, 480, 1042, 1398
Fnu4HI GCNGC 8 cut(s) 96, 363, 450, 588, 933, 992, 1513, 1516
FokI GGATG 6 cut(s) 34, 631, 911, 1097, 1174, 1234
FriOI GRGCYC 1 cut(s) 1275
Fsp4HI GCNGC 8 cut(s) 96, 363, 450, 588, 933, 992, 1513, 1516
FspBI CTAG 5 cut(s) 185, 461, 465, 719, 771
GluI GCNGC 8 cut(s) 96, 363, 450, 588, 933, 992, 1513, 1516
HaeIII GGCC 4 cut(s) 479, 755, 886, 971
HapII CCGG 6 cut(s) 404, 476, 756, 1082, 1139, 1413
HgaI GACGC 1 cut(s) 1449
Hin1I GRCGYC 1 cut(s) 1005
Hin1II CATG 4 cut(s) 73, 484, 1046, 1402
HincII GTYRAC 1 cut(s) 182
HindII GTYRAC 1 cut(s) 182
HinfI GANTC 5 cut(s) 87, 135, 521, 569, 1262
HpaII CCGG 6 cut(s) 404, 476, 756, 1082, 1139, 1413
HphI GGTGA 6 cut(s) 38, 200, 571, 648, 1272, 1335
Hpy166II GTNNAC 4 cut(s) 81, 182, 983, 1099
Hpy188III TCNNGA 5 cut(s) 132, 518, 719, 1388, 1420
Hpy8I GTNNAC 4 cut(s) 81, 182, 983, 1099
Hpy99I CGWCG 2 cut(s) 746, 1007
HpyAV CCTTC 3 cut(s) 410, 591, 971
HpyCH4III ACNGT 5 cut(s) 179, 322, 636, 746, 1093
HpyCH4IV ACGT 1 cut(s) 1005
HpyCH4V TGCA 9 cut(s) 287, 449, 674, 689, 784, 818, 991, 1322, 1515
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 836
HpyF3I CTNAG 7 cut(s) 130, 273, 338, 347, 507, 834, 1389
HpySE526I ACGT 1 cut(s) 1005
Hsp92I GRCGYC 1 cut(s) 1005
Hsp92II CATG 4 cut(s) 73, 484, 1046, 1402
Kzo9I GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
LmnI GCTCC 1 cut(s) 1147
Lsp1109I GCAGC 7 cut(s) 82, 374, 461, 574, 919, 1003, 1499
LweI GCATC 5 cut(s) 396, 436, 805, 1147, 1309
MaeI CTAG 5 cut(s) 185, 461, 465, 719, 771
MaeII ACGT 1 cut(s) 1005
MaeIII GTNAC 6 cut(s) 188, 316, 376, 621, 630, 760
MalI GATC 6 cut(s) 30, 122, 668, 1212, 1394, 1457
MboI GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
MboII GAAGA 4 cut(s) 13, 95, 98, 970
MfeI CAATTG 2 cut(s) 965, 1266
MflI RGATCY 1 cut(s) 1392
MhlI GDGCHC 1 cut(s) 1275
MlsI TGGCCA 2 cut(s) 886, 971
MluNI TGGCCA 2 cut(s) 886, 971
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 1 cut(s) 1316
Mox20I TGGCCA 2 cut(s) 886, 971
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 2 cut(s) 886, 971
MseI TTAA 3 cut(s) 227, 864, 1205
MslI CAYNNNNRTG 1 cut(s) 533
Msp20I TGGCCA 2 cut(s) 886, 971
MspA1I CMGCKG 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 6 cut(s) 404, 476, 756, 1082, 1139, 1413
MunI CAATTG 2 cut(s) 965, 1266
Mva1269I GAATGC 2 cut(s) 287, 934
MwoI GCNNNNNNNGC 2 cut(s) 348, 836
NcoI CCATGG 1 cut(s) 69
NdeII GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
NheI GCTAGC 2 cut(s) 460, 464
NlaIII CATG 4 cut(s) 73, 484, 1046, 1402
NlaIV GGNNCC 2 cut(s) 1143, 1495
NmuCI GTSAC 5 cut(s) 188, 316, 376, 621, 760
NsiI ATGCAT 1 cut(s) 676
PctI GAATGC 2 cut(s) 287, 934
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 87, 135, 521, 1262
PflMI CCANNNNNTGG 2 cut(s) 372, 1503
PkrI GCNGC 8 cut(s) 97, 364, 451, 589, 934, 993, 1514, 1517
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 1143, 1495
PspPI GGNCC 1 cut(s) 1046
PstI CTGCAG 1 cut(s) 1517
PsuI RGATCY 1 cut(s) 1392
RsaI GTAC 5 cut(s) 82, 147, 474, 982, 1508
RsaNI GTAC 5 cut(s) 81, 146, 473, 981, 1507
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 3 cut(s) 227, 864, 1205
SatI GCNGC 8 cut(s) 96, 363, 450, 588, 933, 992, 1513, 1516
Sau3AI GATC 6 cut(s) 28, 120, 666, 1210, 1392, 1455
Sau96I GGNCC 1 cut(s) 1046
SchI GAGTC 1 cut(s) 578
SduI GDGCHC 1 cut(s) 1275
SfaNI GCATC 5 cut(s) 396, 436, 805, 1147, 1309
SfcI CTRYAG 2 cut(s) 53, 1513
SinI GGWCC 1 cut(s) 1046
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 226, 807
SmoI CTYRAG 2 cut(s) 226, 807
SsiI CCGC 2 cut(s) 452, 1221
SspMI CTAG 5 cut(s) 185, 461, 465, 719, 771
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 5 cut(s) 179, 322, 636, 746, 1093
TaiI ACGT 1 cut(s) 1008
TaqI TCGA 3 cut(s) 704, 890, 1002
TaqII GACCGA 1 cut(s) 1058
TfiI GAWTC 4 cut(s) 87, 135, 521, 1262
Tru1I TTAA 3 cut(s) 227, 864, 1205
Tru9I TTAA 3 cut(s) 227, 864, 1205
TscAI CASTG 2 cut(s) 327, 377
TseFI GTSAC 5 cut(s) 188, 316, 376, 621, 760
TseI GCWGC 8 cut(s) 95, 362, 449, 587, 932, 991, 1512, 1515
Tsp45I GTSAC 5 cut(s) 188, 316, 376, 621, 760
TspDTI ATGAA 4 cut(s) 17, 36, 738, 921
TspGWI ACGGA 1 cut(s) 1274
TspRI CASTG 2 cut(s) 327, 377
Van91I CCANNNNNTGG 2 cut(s) 372, 1503
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 1046
XapI RAATTY 5 cut(s) 255, 295, 711, 1063, 1324
XbaI TCTAGA 1 cut(s) 718
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 5 cut(s) 185, 461, 465, 719, 771
ZraI GACGTC 1 cut(s) 1006
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.