Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002223

Physical Location & Seq

Genomic Coordinates Forward (+)

59663544 .. 59664851

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCAAGTTTTAGAAGAATCAGTGCTGTTTTTCTTCTTCTGTGTTCGCTGATTTGTTTACTACATGGAGTTTCATCACTTGGCATAAACTATGGCCAACTCGGTGACGATTTGCTGCCACCACAGCAAGTTGTGAACCTCCTAACCGGCAACAACATCACCAAAACAAGAATCTACGACACAAATCCACAAATATTAACTGCATTCGCCAATTCCAATATTGAGCTAATTGTGACAGTTGAAAATGAAGTGCTGGGAGAATTAACCAATTCCGAAGCAGGCCTTCAATGGGTTAGCACACACATCAAGCCTTACTTTCCCGCAACGAAAATCACAGGCATTGCTGTAGGGAACGAGATTGATGCAACGGATTTGCTACCTAGCCTTGTACCGGCCATGTCCAGCATTCAAGGGGCACTTTCTCAGCTAGGCCTTGACTCACACATCAAGGTGTCATCGCCTTTTTCTTATTCGGTGATCAAAGAGTCTTATCCGCCTTCTGCTGGCAGTTTCAAAAGCGAGGTCTCCAGTGTAATGTCACAATTGTTACAGTTTCTGTCAAGCACAAAGGCACCATTTTGGATCAATGCATATCCTTACTTTGCCTACAAGGGCAACTCGAAAGAAATTCCTCTAGACTATGTGCTTTTCAGTAATGCTGGTTCATCAGCAGGAGTGACTGACCCTACTAGCAATTTGCACTATGACAACATGTTGTATGCTCAAGTAGATGCAGTCACTTTTGCCATTTCTAAATTGGGCTTCGATGGCGTAGAGGTTAGGGTTGCAGAGACAGGGTGGCCATCAAAAGGGGATGCTGGTGAACTTGGTGCAAGTTTAGAGAATGCTGCTATATACAATGGGAACTTATTGAAGAGGCAATTGGCCAACGAAGGTACACCTTTGAAGCCTAGGCTTGACGTCTATATTTTTGCTCTTTTCAACGAGAACAAAAAGCCCGGACCAACATCGGAGAGGAATTTTGGTCTATTTCAACCGGATGGAACTTCGGCTTACAATGTGGGCTTGTCTGGATCATCATCTACCTCAACTAATGCCCCATCACCCCCATCGCCAAGCCTATCAAAACCACCAACTTCAGCTACCAACTTAACTGGTGCCTCATCATCACCCTCAATCCCATTAAAATCATCAAGCTCGGCTACTAATTCAACTAATGCCTCATCCCCCTCGTCACTTCCTGAGATTGATATGACTTATTCCTCTGGTGCCAAGGCAGCAACAATGGGAAGCTTGGTGTACATTTTTCTTGGTGTATTGACCTTCCAATTTTATATGATGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

435

Amino Acids

46.2

Weight (kDa)

5.2

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	27 - 341	4e-81	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30080 AT1G30080 AT4G18340 AT4G18340
fragaria_vesca	FvH4_3g05490 FvH4_3g05490 FvH4_4g29790 FvH4_4g29811 FvH4_4g29820
malus_domestica	MD05G1283400.v1.1 MD10G1261700.v1.1
prunus_persica	Prupe.4G081200_v2.0.a1
pyrus_communis	pycom10g21790
rosa_chinensis	RchiOBHm_Chr4g0438021 RchiOBHm_Chr4g0438071 RchiOBHm_Chr5g0006351 RchiOBHm_Chr5g0014251
rosa_laevigata	RLG00000006390 RLG00000032094
rosa_multiflora	Rmu_sc0004728.1_g000007 Rmu_sc0007538.1_g000003 Rmu_sc0027297.1_g000001 Rmu_ssc0000120.1_g000004
rosa_roxburghii	Rroxscaffold_1G00062320 Rroxscaffold_5G00379160 Rroxscaffold_5G00379200
rosa_rugosa	Rorug04G0306300 Rorug04G0306500 Rorug05G0016600
rosa_samantha	Rh4AG357900 Rh4AG358200 Rh4BG368800 Rh4CG383200 Rh4DG363900 Rh5AG049100 Rh5AG110900 Rh5BG108200 Rh5CG056600 Rh5DG106300
rosa_wichuraiana	Rw0G006270 Rw0G011480 Rw0G016210 Rw5G009670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	924
AccB1I	GGYRCC	3 cut(s)	571, 1118, 1229
AciI	CCGC	2 cut(s)	321, 494
AclWI	GGATC	2 cut(s)	590, 1042
AcoI	YGGCCR	4 cut(s)	94, 393, 800, 885
AcsI	RAATTY	2 cut(s)	627, 979
AcuI	CTGAAG	1 cut(s)	1083
AcyI	GRCGYC	1 cut(s)	921
AfaI	GTAC	3 cut(s)	390, 898, 1262
AfiI	CCNNNNNNNGG	4 cut(s)	289, 391, 503, 809
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	9 cut(s)	242, 287, 410, 514, 874, 907, 943, 995, 1173
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AluBI	AGCT	5 cut(s)	226, 427, 1103, 1158, 1254
AluI	AGCT	5 cut(s)	226, 427, 1103, 1158, 1254
Alw26I	GTCTC	2 cut(s)	529, 785
AlwI	GGATC	2 cut(s)	590, 1042
AlwNI	CAGNNNCTG	1 cut(s)	556
AoxI	GGCC	6 cut(s)	94, 280, 393, 430, 800, 885
ApeKI	GCWGC	3 cut(s)	115, 848, 1238
ApoI	RAATTY	2 cut(s)	627, 979
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AspA2I	CCTAGG	1 cut(s)	911
AspS9I	GGNCC	1 cut(s)	962
AsuC2I	CCSGG	1 cut(s)	960
AsuHPI	GGTGA	6 cut(s)	116, 151, 487, 833, 1056, 1122
AvaII	GGWCC	1 cut(s)	962
AvrII	CCTAGG	1 cut(s)	911
BaeGI	GKGCMC	1 cut(s)	418
BalI	TGGCCA	3 cut(s)	96, 802, 887
BanI	GGYRCC	3 cut(s)	571, 1118, 1229
BbvI	GCAGC	3 cut(s)	102, 835, 1250
BccI	CCATC	5 cut(s)	761, 811, 995, 1069, 1078
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BclI	TGATCA	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	960
BcoDI	GTCTC	2 cut(s)	529, 785
BfaI	CTAG	6 cut(s)	381, 428, 635, 690, 912, 1306
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	3 cut(s)	116, 849, 1239
BlnI	CCTAGG	1 cut(s)	911
BlsI	GCNGC	3 cut(s)	117, 850, 1240
Bme1390I	CCNGG	1 cut(s)	960
Bme18I	GGWCC	1 cut(s)	962
BmgT120I	GGNCC	1 cut(s)	962
BmiI	GGNNCC	3 cut(s)	573, 1120, 1231
BmrFI	CCNGG	1 cut(s)	960
BmsI	GCATC	3 cut(s)	352, 721, 805
BpmI	CTGGAG	1 cut(s)	511
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	960
BsaBI	GATNNNNATC	1 cut(s)	1039
BsaHI	GRCGYC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	2 cut(s)	911, 1233
BsaWI	WCCGGW	1 cut(s)	997
Bsc4I	CCNNNNNNNGG	4 cut(s)	289, 391, 503, 809
Bse118I	RCCGGY	2 cut(s)	146, 391
Bse1I	ACTGG	2 cut(s)	528, 1120
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	1039
BseDI	CCNNGG	2 cut(s)	911, 1233
BseGI	GGATG	3 cut(s)	820, 1006, 1184
BseJI	GATNNNNATC	1 cut(s)	1039
BseLI	CCNNNNNNNGG	4 cut(s)	289, 391, 503, 809
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	437, 1194
BseNI	ACTGG	2 cut(s)	528, 1120
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	3 cut(s)	102, 835, 1250
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	6 cut(s)	96, 282, 395, 432, 802, 887
BshNI	GGYRCC	3 cut(s)	571, 1118, 1229
BsiSI	CCGG	4 cut(s)	147, 392, 960, 998
BslI	CCNNNNNNNGG	4 cut(s)	289, 391, 503, 809
BsmAI	GTCTC	2 cut(s)	529, 785
BsmI	GAATGC	3 cut(s)	203, 405, 850
BsnI	GGCC	6 cut(s)	96, 282, 395, 432, 802, 887
Bso31I	GGTCTC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	1 cut(s)	1260
Bsp143I	GATC	4 cut(s)	477, 582, 1034, 1302
BspACI	CCGC	2 cut(s)	321, 494
BspANI	GGCC	6 cut(s)	96, 282, 395, 432, 802, 887
BspCNI	CTCAG	2 cut(s)	436, 1195
BspLI	GGNNCC	3 cut(s)	573, 1120, 1231
BspPI	GGATC	2 cut(s)	590, 1042
BspT107I	GGYRCC	3 cut(s)	571, 1118, 1229
BspTNI	GGTCTC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	339
BsrFI	RCCGGY	2 cut(s)	146, 391
BsrGI	TGTACA	1 cut(s)	1260
BsrI	ACTGG	2 cut(s)	528, 1120
BssAI	RCCGGY	2 cut(s)	146, 391
BssECI	CCNNGG	2 cut(s)	911, 1233
BssMI	GATC	4 cut(s)	477, 582, 1034, 1302
BssNI	GRCGYC	1 cut(s)	921
BssT1I	CCWWGG	2 cut(s)	911, 1233
Bst4CI	ACNGT	2 cut(s)	238, 552
Bst6I	CTCTTC	1 cut(s)	869
BstACI	GRCGYC	1 cut(s)	921
BstAUI	TGTACA	1 cut(s)	1260
BstC8I	GCNNGC	2 cut(s)	280, 505
BstDEI	CTNAG	2 cut(s)	423, 1203
BstF5I	GGATG	3 cut(s)	820, 1006, 1184
BstKTI	GATC	4 cut(s)	480, 585, 1037, 1305
BstMAI	GTCTC	2 cut(s)	529, 785
BstMBI	GATC	4 cut(s)	477, 582, 1034, 1302
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 768, 1238
BstNSI	RCATGY	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	958
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	102, 835, 1250
BsuRI	GGCC	6 cut(s)	96, 282, 395, 432, 802, 887
BtgZI	GCGATG	2 cut(s)	441, 1056
BtsCI	GGATG	3 cut(s)	820, 1006, 1184
BtsIMutI	CAGTG	2 cut(s)	28, 535
Cac8I	GCNNGC	2 cut(s)	280, 505
CaiI	CAGNNNCTG	1 cut(s)	556
Cfr10I	RCCGGY	2 cut(s)	146, 391
Cfr13I	GGNCC	1 cut(s)	962
Csp6I	GTAC	3 cut(s)	389, 897, 1261
CviAII	CATG	3 cut(s)	65, 397, 712
CviQI	GTAC	3 cut(s)	389, 897, 1261
DdeI	CTNAG	2 cut(s)	423, 1203
DpnI	GATC	4 cut(s)	479, 584, 1036, 1304
DpnII	GATC	4 cut(s)	477, 582, 1034, 1302
EaeI	YGGCCR	4 cut(s)	94, 393, 800, 885
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
EciI	GGCGGA	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	911, 1233
Eco147I	AGGCCT	2 cut(s)	282, 432
Eco31I	GGTCTC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	1 cut(s)	1083
EcoT14I	CCWWGG	2 cut(s)	911, 1233
EcoT22I	ATGCAT	1 cut(s)	592
ErhI	CCWWGG	2 cut(s)	911, 1233
FaeI	CATG	3 cut(s)	68, 400, 715
FalI	AAGNNNNNCTT	6 cut(s)	267, 299, 299, 331, 402, 434
FatI	CATG	3 cut(s)	64, 396, 711
FauI	CCCGC	1 cut(s)	328
FbaI	TGATCA	1 cut(s)	477
Fnu4HI	GCNGC	3 cut(s)	116, 849, 1239
FokI	GGATG	3 cut(s)	827, 1013, 1171
Fsp4HI	GCNGC	3 cut(s)	116, 849, 1239
FspBI	CTAG	6 cut(s)	381, 428, 635, 690, 912, 1306
GluI	GCNGC	3 cut(s)	116, 849, 1239
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	1 cut(s)	511
HaeIII	GGCC	6 cut(s)	96, 282, 395, 432, 802, 887
HapII	CCGG	4 cut(s)	147, 392, 960, 998
Hin1I	GRCGYC	1 cut(s)	921
Hin1II	CATG	3 cut(s)	68, 400, 715
HindIII	AAGCTT	1 cut(s)	1252
HinfI	GANTC	4 cut(s)	18, 171, 437, 485
HpaII	CCGG	4 cut(s)	147, 392, 960, 998
HphI	GGTGA	6 cut(s)	116, 151, 487, 833, 1056, 1122
Hpy166II	GTNNAC	5 cut(s)	59, 136, 824, 899, 1261
Hpy188I	TCNGA	2 cut(s)	274, 973
Hpy188III	TCNNGA	3 cut(s)	635, 1032, 1202
Hpy8I	GTNNAC	5 cut(s)	59, 136, 824, 899, 1261
HpyAV	CCTTC	4 cut(s)	293, 507, 887, 1294
HpyCH4III	ACNGT	2 cut(s)	238, 552
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	7 cut(s)	203, 365, 590, 700, 734, 788, 833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 768, 1238
HpyF3I	CTNAG	2 cut(s)	423, 1203
HpySE526I	ACGT	1 cut(s)	921
Hsp92I	GRCGYC	1 cut(s)	921
Hsp92II	CATG	3 cut(s)	68, 400, 715
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	4 cut(s)	477, 582, 1034, 1302
Lsp1109I	GCAGC	3 cut(s)	102, 835, 1250
LweI	GCATC	3 cut(s)	352, 721, 805
MaeI	CTAG	6 cut(s)	381, 428, 635, 690, 912, 1306
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	7 cut(s)	104, 232, 537, 546, 676, 736, 1194
MalI	GATC	4 cut(s)	479, 584, 1036, 1304
MboI	GATC	4 cut(s)	477, 582, 1034, 1302
MboII	GAAGA	4 cut(s)	26, 27, 29, 886
MfeI	CAATTG	2 cut(s)	542, 881
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	3 cut(s)	96, 802, 887
MluNI	TGGCCA	3 cut(s)	96, 802, 887
MlyI	GAGTC	2 cut(s)	431, 494
Mox20I	TGGCCA	3 cut(s)	96, 802, 887
Mph1103I	ATGCAT	1 cut(s)	592
MscI	TGGCCA	3 cut(s)	96, 802, 887
MseI	TTAA	4 cut(s)	197, 263, 1112, 1145
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	3 cut(s)	96, 802, 887
MspI	CCGG	4 cut(s)	147, 392, 960, 998
MspR9I	CCNGG	1 cut(s)	960
MunI	CAATTG	2 cut(s)	542, 881
Mva1269I	GAATGC	3 cut(s)	203, 405, 850
MwoI	GCNNNNNNNGC	3 cut(s)	124, 768, 1238
NciI	CCSGG	1 cut(s)	960
NdeII	GATC	4 cut(s)	477, 582, 1034, 1302
NlaIII	CATG	3 cut(s)	68, 400, 715
NlaIV	GGNNCC	3 cut(s)	573, 1120, 1231
NmeAIII	GCCGAG	1 cut(s)	1139
NmuCI	GTSAC	6 cut(s)	104, 232, 537, 676, 736, 1194
NsiI	ATGCAT	1 cut(s)	592
NspI	RCATGY	1 cut(s)	715
PceI	AGGCCT	2 cut(s)	282, 432
PciI	ACATGT	1 cut(s)	711
PctI	GAATGC	3 cut(s)	203, 405, 850
PfeI	GAWTC	2 cut(s)	18, 171
PkrI	GCNGC	3 cut(s)	117, 850, 1240
PleI	GAGTC	2 cut(s)	431, 493
PpsI	GAGTC	2 cut(s)	431, 493
PscI	ACATGT	1 cut(s)	711
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	3 cut(s)	573, 1120, 1231
PspPI	GGNCC	1 cut(s)	962
PsrI	GAACNNNNNNTAC	2 cut(s)	646, 678
PstNI	CAGNNNCTG	1 cut(s)	556
RsaI	GTAC	3 cut(s)	390, 898, 1262
RsaNI	GTAC	3 cut(s)	389, 897, 1261
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	4 cut(s)	197, 263, 1112, 1145
SatI	GCNGC	3 cut(s)	116, 849, 1239
Sau3AI	GATC	4 cut(s)	477, 582, 1034, 1302
Sau96I	GGNCC	1 cut(s)	962
SchI	GAGTC	2 cut(s)	431, 494
ScrFI	CCNGG	1 cut(s)	960
SduI	GDGCHC	1 cut(s)	418
SfaNI	GCATC	3 cut(s)	352, 721, 805
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	449
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
SseBI	AGGCCT	2 cut(s)	282, 432
SsiI	CCGC	2 cut(s)	321, 494
SspI	AATATT	2 cut(s)	195, 220
SspMI	CTAG	6 cut(s)	381, 428, 635, 690, 912, 1306
StuI	AGGCCT	2 cut(s)	282, 432
StyD4I	CCNGG	1 cut(s)	958
StyI	CCWWGG	2 cut(s)	911, 1233
TaaI	ACNGT	2 cut(s)	238, 552
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	2 cut(s)	620, 765
TatI	WGTACW	1 cut(s)	1260
TfiI	GAWTC	2 cut(s)	18, 171
Tru1I	TTAA	4 cut(s)	197, 263, 1112, 1145
Tru9I	TTAA	4 cut(s)	197, 263, 1112, 1145
TscAI	CASTG	2 cut(s)	28, 535
TseFI	GTSAC	6 cut(s)	104, 232, 537, 676, 736, 1194
TseI	GCWGC	3 cut(s)	115, 848, 1238
Tsp45I	GTSAC	6 cut(s)	104, 232, 537, 676, 736, 1194
TspDTI	ATGAA	3 cut(s)	63, 261, 654
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	28, 535
VpaK11BI	GGWCC	1 cut(s)	962
XapI	RAATTY	2 cut(s)	627, 979
XbaI	TCTAGA	1 cut(s)	634
XceI	RCATGY	1 cut(s)	715
XcmI	CCANNNNNNNNNTGG	1 cut(s)	754
XmaJI	CCTAGG	1 cut(s)	911
XspI	CTAG	6 cut(s)	381, 428, 635, 690, 912, 1306
ZraI	GACGTC	1 cut(s)	922
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.