FvH4_4g29811

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002223
Physical Location & Seq
Forward (+)
29781306 .. 29783061
1756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g29811.t1

Sequence Viewer

Length: 405 bp
ATGTGCGCGTTGGAATGGGACATGAGCATTTTAGATGAATTTGGTGATGGAAAGGATTTGGCGGTGACCCAGCCGCTTGGTGACAATTTGCTACCACCGCAACAAGTTGTGAGCCTCTTAAGGTCCAACAACATCGCAAAAGCAAGAATTTTTGACACCAATCCTCAAATACTATCTGCATTCGCAAATTCGGATATTCAGCTCATTGTGACGGTGGAAAACACTATGTTAAGCCAACTAAGCAACCCCCAAGCAGCCATTCAGTGGGTCACTACACGCATCAAGCCTTACCTTCCGGCAACGAAAATCACAGACATTATGATAGGGAACGAGCTTGATGCAACGGATTTGCTAGCTAGCCTTGTACCGGCGATGTCCAGCATTCAAAAGGCCCTATCTCAGTGA

Protein Analysis

135

Amino Acids

14.61

Weight (kDa)

4.31

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 27 - 133 3.9e-19 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 8
AciI CCGC 3 cut(s) 62, 74, 98
AcsI RAATTY 3 cut(s) 38, 147, 187
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 2 cut(s) 264, 367
AflII CTTAAG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AluBI AGCT 3 cut(s) 202, 334, 356
AluI AGCT 3 cut(s) 202, 334, 356
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 3 cut(s) 38, 147, 187
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 123, 391
AsuHPI GGTGA 3 cut(s) 56, 76, 92
AsuNHI GCTAGC 2 cut(s) 352, 356
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 266
BccI CCATC 1 cut(s) 41
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BfaI CTAG 2 cut(s) 353, 357
BfrI CTTAAG 1 cut(s) 118
BisI GCNGC 2 cut(s) 74, 255
BlsI GCNGC 2 cut(s) 75, 256
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 123, 391
BmsI GCATC 2 cut(s) 288, 328
BmtI GCTAGC 2 cut(s) 356, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 367
Bse118I RCCGGY 1 cut(s) 367
BseLI CCNNNNNNNGG 2 cut(s) 264, 367
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 392
BsiSI CCGG 2 cut(s) 296, 368
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 2 cut(s) 264, 367
BsmFI GGGAC 1 cut(s) 32
BsmI GAATGC 2 cut(s) 179, 381
BsnI GGCC 1 cut(s) 392
BspACI CCGC 3 cut(s) 62, 74, 98
BspANI GGCC 1 cut(s) 392
BspFNI CGCG 1 cut(s) 8
BspOI GCTAGC 2 cut(s) 356, 360
BspTI CTTAAG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 367
Bst4CI ACNGT 1 cut(s) 214
BstAFI CTTAAG 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 354, 358
BstDEI CTNAG 2 cut(s) 239, 399
BstEII GGTNACC 1 cut(s) 64
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 8
BstMWI GCNNNNNNNGC 2 cut(s) 97, 240
BstPI GGTNACC 1 cut(s) 64
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 77
BsuRI GGCC 1 cut(s) 392
BtgZI GCGATG 2 cut(s) 118, 386
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 354, 358
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 123, 391
Csp6I GTAC 1 cut(s) 365
CviAII CATG 1 cut(s) 22
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 2 cut(s) 239, 399
Eco47I GGWCC 1 cut(s) 123
Eco91I GGTNACC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 64
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 227, 320
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 74, 255
Fsp4HI GCNGC 2 cut(s) 74, 255
FspBI CTAG 2 cut(s) 353, 357
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 74, 255
GsaI CCCAGC 1 cut(s) 73
HaeIII GGCC 1 cut(s) 392
HapII CCGG 2 cut(s) 296, 368
HhaI GCGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HpaII CCGG 2 cut(s) 296, 368
HphI GGTGA 3 cut(s) 56, 76, 92
Hpy188I TCNGA 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 179, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 97, 240
HpyF3I CTNAG 2 cut(s) 239, 399
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 83, 309, 381, 391
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 2 cut(s) 288, 328
MaeI CTAG 2 cut(s) 353, 357
MaeIII GTNAC 4 cut(s) 64, 80, 208, 268
MluCI AATT 4 cut(s) 38, 85, 147, 187
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 2 cut(s) 125, 174
MseI TTAA 2 cut(s) 119, 230
MspCI CTTAAG 1 cut(s) 118
MspI CCGG 2 cut(s) 296, 368
Mva1269I GAATGC 2 cut(s) 179, 381
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 97, 240
NheI GCTAGC 2 cut(s) 352, 356
NlaIII CATG 1 cut(s) 25
NmuCI GTSAC 4 cut(s) 64, 80, 208, 268
PctI GAATGC 2 cut(s) 179, 381
PflMI CCANNNNNTGG 1 cut(s) 264
PkrI GCNGC 2 cut(s) 75, 256
PspEI GGTNACC 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 69
PspPI GGNCC 2 cut(s) 123, 391
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
SaqAI TTAA 2 cut(s) 119, 230
SatI GCNGC 2 cut(s) 74, 255
Sau96I GGNCC 2 cut(s) 123, 391
SetI ASST 5 cut(s) 125, 204, 294, 336, 358
SfaNI GCATC 2 cut(s) 288, 328
SinI GGWCC 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 4 cut(s) 38, 85, 147, 187
SsiI CCGC 3 cut(s) 62, 74, 98
SspMI CTAG 2 cut(s) 353, 357
TaaI ACNGT 1 cut(s) 214
TasI AATT 4 cut(s) 38, 85, 147, 187
TauI GCSGC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 119, 230
Tru9I TTAA 2 cut(s) 119, 230
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 4 cut(s) 64, 80, 208, 268
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 4 cut(s) 64, 80, 208, 268
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 264
Vha464I CTTAAG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 3 cut(s) 38, 147, 187
XspI CTAG 2 cut(s) 353, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.